Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., Probable oligopeptide-transport integral membrane protein ABC transporter OppC from Mycobacterium tuberculosis H37Rv

 Score =  111 bits (278), Expect = 2e-29
 Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 5/239 (2%)

Query: 72  DRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYF 131
           D   L       H LGT  +G+D+ +Q   G + S+ +G    +    +A  +G  +GYF
Sbjct: 50  DFNALLQPPGTKHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYF 109

Query: 132 GGKIDDFLTAAMNIMLVIPQYPLLFVLAAFI-GEAGPLTIALIIGCTSWAWGARVVRSQT 190
           GG  D  L   ++++LV+P + L+ ++       A  + + L++    W   +R+VR  T
Sbjct: 110 GGWRDRTLMWVVDLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMT 169

Query: 191 MALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG- 249
           M+LRE+EF++AA  +G SS RII   ++PN+ SI+      +V  AI+ E  +SFLG G 
Sbjct: 170 MSLREREFIRAARYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGI 229

Query: 250 DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLRS 308
            P  +S G ++ +   S++      W  L P   L L++    L    + +  +P  RS
Sbjct: 230 QPPDVSLGTLIADGTASATAFP---WVFLFPASILVLILVCANLTGDGLRDALDPASRS 285