Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  120 bits (301), Expect = 4e-32
 Identities = 93/304 (30%), Positives = 144/304 (47%), Gaps = 35/304 (11%)

Query: 16  IGVTILGLFFLLAVAA---PLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAENLATD 72
           + VT   LF +LA++A   P++  H       NP +     +  A+  P      N A  
Sbjct: 22  VAVTSFALFVVLAMSALLAPVIAPH-------NPFDGANIDIMDAETPPLWKDGGNPA-- 72

Query: 73  RRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFG 132
                       +LGT   GRD++S + YG RVSL +G GA      +  ++G+ +GY  
Sbjct: 73  -----------FLLGTDNQGRDLFSAILYGMRVSLLIGVGAVAMQACIGIMVGLLSGYGS 121

Query: 133 GKIDDFLTAAMNIMLVIPQYPLLFVLAAFIG---------EAGPLTIALIIGCTSWAWGA 183
            ++D+ L    ++ L    Y +   L A +          +     + L+IG   W   A
Sbjct: 122 RRLDNILMRIADVQLSFSSYMVAIFLGAIVQMTFGVGRYEQVAVPFLVLVIGLAEWPQYA 181

Query: 184 RVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATI 243
           R VR+  +A ++KE+V+AA V+G   +RI++  ILPN ++ V       V  AIM EA +
Sbjct: 182 RTVRASVLAEKKKEYVEAARVIGLRPFRIMWRHILPNTLTPVLVISTVQVANAIMSEAAL 241

Query: 244 SFLGLGDPNT-ISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIA 302
           SFLGLG P T  S G ++ +         G+WW  L P + L LLV  + LL   + +  
Sbjct: 242 SFLGLGMPVTKPSLGSLIKS--GFQYFFSGSWWITLFPGVVLILLVLSINLLGDWLRDFL 299

Query: 303 NPQL 306
           NP+L
Sbjct: 300 NPKL 303