Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., permease protein, ABC-type oligopeptide transporter from Marinobacter adhaerens HP15

 Score =  148 bits (373), Expect = 2e-40
 Identities = 100/300 (33%), Positives = 151/300 (50%), Gaps = 28/300 (9%)

Query: 3   ALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPD 62
           A  K  R +    IG  IL +  + AV AP L  H+P  +       P   V+       
Sbjct: 27  AALKRARSHYGLKIGFGILLVMAVFAVFAPWLAPHDPYLQNLPMRMLPPVWVEGGS---- 82

Query: 63  GWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLAT 122
            W                  +++LGT  +GRD  S++ YGAR+S+ +G GA      +  
Sbjct: 83  -W------------------EYLLGTDHLGRDYMSRIIYGARISMTIGIGAATIGMVIGV 123

Query: 123 VIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWG 182
            +G+ AGYFGG +D  +   +   L +P   L+  L   IG++  + I  +IG T W + 
Sbjct: 124 TLGLIAGYFGGWLDQAVNFLVTCQLAVPSLLLIMALVFVIGQSITVVI-FVIGATHWVFY 182

Query: 183 ARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEAT 242
             V RS T+ LRE +FV AA+ +G S ++I   E+LPNL++ +   F   V  AI+ EAT
Sbjct: 183 LVVTRSATLRLRELDFVAAAQAMGCSKFQIAVKEVLPNLVNQIMVIFTLEVAVAILNEAT 242

Query: 243 ISFLGLGDPNTI-SWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEI 301
           +SFLGLG P+ I SWG+M+   +   +M    W  +L P +SL +LV  + LL   V ++
Sbjct: 243 LSFLGLGIPSPIPSWGLMI--AEGKQAMFFQPWLVIL-PGISLFILVIAINLLGDGVRDV 299