Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., oligopeptide/dipeptide ABC transporter, permease protein from Marinobacter adhaerens HP15

 Score =  140 bits (352), Expect = 6e-38
 Identities = 99/312 (31%), Positives = 151/312 (48%), Gaps = 32/312 (10%)

Query: 5   WKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGW 64
           W   + +++A++   +L L  L AV APLL          +P++     +  ++  P G 
Sbjct: 18  WYSFKRDKVAIVSFAVLLLMVLAAVFAPLLAP-------ADPYDLAQINIMNSELPPVGM 70

Query: 65  IAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVI 124
              + A               LGT   GRD+ S + YG RVSL +GFGA +   FL  + 
Sbjct: 71  SGADPAFP-------------LGTDAQGRDLLSTILYGTRVSLMIGFGAVVLQAFLGILF 117

Query: 125 GVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAA---------FIGEAGPLTIALIIG 175
           G+ AGY GGK+D  L    ++ L      +  ++ A           GE     +  IIG
Sbjct: 118 GLLAGYLGGKVDAVLMRIADVQLSFSTLMVAIIVGAVFKASFGNLMFGEIAIYMLIFIIG 177

Query: 176 CTSWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMY 235
              W   AR VR+  +A ++KE+V AA+V+G  + RI+F  ILPN +S +       +  
Sbjct: 178 VAEWPQIARTVRASVLAEKKKEYVDAAKVMGFGTRRIMFRHILPNTLSPIFVIATVQIAN 237

Query: 236 AIMMEATISFLGLGDPNT-ISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALL 294
           AI+ EA +SFLGLG P T  S G ++ +      +  G+WW  L P L L +LV  + LL
Sbjct: 238 AIISEAALSFLGLGMPETQPSLGSLIKS--GFDYIQSGSWWITLIPGLVLVVLVLVINLL 295

Query: 295 NFAVDEIANPQL 306
              + ++ NP+L
Sbjct: 296 GDWLRDVMNPRL 307