Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  155 bits (391), Expect = 2e-42
 Identities = 110/299 (36%), Positives = 154/299 (51%), Gaps = 36/299 (12%)

Query: 11  NRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAENLA 70
           N +  IG  I+G   LLA+ AP +  ++P                              A
Sbjct: 35  NILFAIGFAIVGSMSLLALLAPWIAPYDPT-----------------------------A 65

Query: 71  TDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGF-GAGITVCFLATVIGVSAG 129
               T+     A H+LGT  +GRDV S++ YGARVSL VGF   GI V  +   +G+ AG
Sbjct: 66  LHLDTILSGPSATHLLGTDALGRDVLSRLLYGARVSLWVGFVSVGIAVA-IGLAVGLVAG 124

Query: 130 YFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQ 189
           YFGG ID+     ++IML  P + L+  + AF+ E     I  +IG TSW   AR+VR++
Sbjct: 125 YFGGIIDELAMRLVDIMLCFPSFFLILAVIAFL-EPSLGNIMAVIGLTSWMGVARLVRAE 183

Query: 190 TMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG 249
           T++LRE+EFV AA + G    RII   ILPN ++ V  S    V  AI+ E+ +SFLGLG
Sbjct: 184 TLSLREREFVAAARLAGAGRTRIILTHILPNAMAPVLVSATLGVAGAILTESALSFLGLG 243

Query: 250 -DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLR 307
             P   SWG ML        +L  A W  L P L++ + V G  LL  ++ +  +P+L+
Sbjct: 244 VQPPDPSWGNMLLE---GKDVLEIAPWMSLFPGLAILVTVLGYNLLGESLRDFLDPRLK 299