Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  133 bits (334), Expect = 7e-36
 Identities = 98/316 (31%), Positives = 152/316 (48%), Gaps = 38/316 (12%)

Query: 5   WKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGW 64
           WK  R + +A++  +++ L  L A+ APL+  ++P     NP         +A   P+ +
Sbjct: 32  WKFRR-SPVALVSFSVVVLLVLAALFAPLIAPYDPF----NPASLNLMNGFSAPMTPNAF 86

Query: 65  IAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVI 124
             +                  LGT   GRDV+S + YG R+SL VGF A +    L   +
Sbjct: 87  TGDTFW---------------LGTDDQGRDVFSTILYGMRISLFVGFAAVLFAMTLGVTL 131

Query: 125 GVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLT------------IAL 172
           G+ AGY GG ++  +    ++ L    +P + V     G A  +T            + L
Sbjct: 132 GLIAGYVGGWVETIIMRVADVQLT---FPAILVAMLIFGIAKGITPVEYRDQMAIWVLIL 188

Query: 173 IIGCTSWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGS 232
            IG + W   ARVVR  T+  + KE+V+AA ++G  S  I+   ILPN++S V      S
Sbjct: 189 AIGLSDWVQFARVVRGATLVEKNKEYVQAARLIGRGSGAIMLRHILPNVLSPVLVIATIS 248

Query: 233 VMYAIMMEATISFLGLGDPNT-ISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGL 291
           +  AI+ EAT+SFLG+G P T  S G ++   Q    +  G WW L  P ++L +L   +
Sbjct: 249 LALAIIAEATLSFLGVGAPPTQPSLGTLIRIGQ--GFLFSGEWWILFFPAVTLLVLALSV 306

Query: 292 ALLNFAVDEIANPQLR 307
            LL   + +  NP+LR
Sbjct: 307 NLLGDWLRDALNPRLR 322