Pairwise Alignments

Query, 327 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., peptide ABC transporter, ATP-binding protein from Pseudomonas fluorescens FW300-N2E2

 Score =  233 bits (594), Expect = 5e-66
 Identities = 130/332 (39%), Positives = 196/332 (59%), Gaps = 13/332 (3%)

Query: 5   LISIRNLCVDYI-----TDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLH 59
           L+ + NL VD       T    + A   + F++  GE+  + GESGCGKS  + +LM L 
Sbjct: 3   LLHVENLRVDIPMGNSPTPDDMLHAVRGLDFEVERGEMLCIVGESGCGKSLTSLALMDLL 62

Query: 60  KPPAFITGGEVIFNGEDILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVIT 119
              A  T   +  +G D+L  S+ RM   R   ++M+FQ  M +LNP  ++ +Q  +V+T
Sbjct: 63  PRKARRTASRLTLDGIDMLGQSERRMCDLRGNRLAMIFQEPMTSLNPAYSIGDQLSEVLT 122

Query: 120 RHTNMTREQAKRRAEGLLEIVDIHPS--RLNDYPHQFSGGMRQRLVIAIALALNPKMIIM 177
           +H  ++R+ A  RA  +LE V I  +  RL  YPHQ SGG+RQR++IA+AL   P +II 
Sbjct: 123 QHRKVSRKDALARAAQMLEKVGISNAAERLRQYPHQLSGGLRQRVIIAMALMCEPDLIIA 182

Query: 178 DEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAP 237
           DEPTTALDV +Q +IL+ I  +++E G +++FITHDL L+   +DR+ +MY+GE++E AP
Sbjct: 183 DEPTTALDVTIQAQILRLIRDIQKELGLAVIFITHDLGLVARIADRVAVMYAGEIVETAP 242

Query: 238 SKQILETPYHPYTKGLGSS--FPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHE 295
           ++Q+ E P HPYT+GL +S   P  T P   L  IPG   +L+   QGC F+ RC +   
Sbjct: 243 ARQLFENPQHPYTRGLLASIPIPGRTKPGEALGSIPGLVPSLVGEQQGCAFRNRCAQAIT 302

Query: 296 ACTK-VPTVLRQIEHGRFSNCHLYTQSNATIK 326
           AC + +P +    + G  + C     + A I+
Sbjct: 303 ACAQDIPEI---EQDGHMARCLFAAPAPAPIR 331