Pairwise Alignments

Query, 343 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  327 bits (839), Expect = 2e-94
 Identities = 168/340 (49%), Positives = 238/340 (70%), Gaps = 3/340 (0%)

Query: 5   LLIENLTCQYDAQTVLKSLSLQVNPGEIVCLLGASGCGKTTLLKAIAGLLPLASGQLSLN 64
           L IE +   Y  QT+L+ L L ++ GEI  LLG SGCGKTTLLKAIAGL P++ G++S+N
Sbjct: 4   LTIEQVHSDYQGQTILRGLDLVLHQGEIAALLGPSGCGKTTLLKAIAGLQPISQGRISIN 63

Query: 65  CVTLDDGKRWLPPEQRNIGMIFQDYALFPHLTVAQNVGFGLDAMPAKQKEAKIAEMLALV 124
              L   + ++P E+R +GMIFQDYALFPHLTVA+N+ FG+  +    ++A++ EMLALV
Sbjct: 64  GRLLSGPETFVPSERREVGMIFQDYALFPHLTVAENILFGVKGLDKAARQARLGEMLALV 123

Query: 125 HLDAFAERYPHQLSGGQQQRVAIARALAYKPDLLLLDEPFSNIDTQVRHELIIEIRKIFK 184
            L+    RYPH+LSGGQQQRV+IARALAY+P+LLLLDEPFSNID +VR E+++EIR+I K
Sbjct: 124 KLEGLGGRYPHELSGGQQQRVSIARALAYEPELLLLDEPFSNIDAKVRGEMMVEIREILK 183

Query: 185 QQGVTAIFVTHSREEAFAFADKMAVMNRGVIEQYGTAAELYYQPSSQFVADFLGGGSYLS 244
           Q+GV+A+FVTHS++EAF FADK+A+   G I QYG+A  LY +P+ ++VA+FLG  +YLS
Sbjct: 184 QRGVSAVFVTHSKDEAFVFADKLALFKDGGIAQYGSAESLYAEPTDKYVAEFLGQVNYLS 243

Query: 245 AKRISETQYQTALGVVEAIARQPIAVEAECKLLLRPQQVQIRAEEESSVTVTEQQFMGDH 304
            +     + QT LG V++ +  P A     +LLLRP+Q+Q+  +E+   T+  ++F+G+ 
Sbjct: 244 CEVKDRARLQTLLGEVQSSSDLPKAAGYRGELLLRPEQLQMAGDEQGEGTIIARRFLGNL 303

Query: 305 CRYLIDAHGTQLIATSS--QPLELGQAVSVNIDTQGVLAF 342
           C Y I   G +++A  S       GQ V +++     + F
Sbjct: 304 CHYSI-LIGEEILAVRSPLHHFSPGQKVGLSVTPHPAVLF 342