Pairwise Alignments

Query, 541 a.a., iron ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 603 a.a., spermidine/putrescine ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  101 bits (251), Expect = 9e-26
 Identities = 131/577 (22%), Positives = 236/577 (40%), Gaps = 65/577 (11%)

Query: 8   WKASSLVLTTLLVL--PILAIFYTAFGNSDEVFAHLLATVMPTYIF------------NT 53
           W    +VL   L +  P+L IFY +F  S   FA +      +Y F            N 
Sbjct: 23  WPRGLVVLLAALAIFVPLLLIFYQSF-LSAPFFAPVKELTFDSYRFIFDDPDFRQAFVNG 81

Query: 54  LVLTCSVLLLALLFGVPSAWLIAMCKLPGERWLQWALVLPLAMPAYIIGYLFTHWFDYAG 113
           L L   + L+A+  G   A+L+    LPG  ++  AL++P+ +   +IG+ +       G
Sbjct: 82  LTLATGLALIAVPLGGMLAFLMVRTDLPGRSFIAPALMVPIFVSPMVIGFGYVVSMGPVG 141

Query: 114 PIQIALRDWT---GWQAGSYWFPDIRSLGGASVVLALVLYPYVYLLCRAAFMEQNVTLLQ 170
              + +++     G++ G  W  +I S     ++  L   P+VYL   AA       + +
Sbjct: 142 FYTVWVKNLLSVFGFE-GDPW--NIYSFTSIVIIAGLTHVPHVYLYASAALRSLGSDVEE 198

Query: 171 SARLLKCSPWQSFRRISLPLARPAIAVGLSLVAMETIGDFGTVSLFAVN----TLTTAVY 226
           +AR+   SP Q    +SLP+  PA+A    LV       FG V +         L T +Y
Sbjct: 199 AARVAGASPLQVALNVSLPMIMPALAYSGVLVFFLGFEVFGLVLVLGDPEGHLVLPTYLY 258

Query: 227 DTW--LGYSNLNAAAKISAIMLVMVLLLLSSERYSRRRQKLYQT-QFNSHEEYRYTLKGW 283
                LG  + +  A ++  ++ + + L+  +R+  R    Y   +     +    L  W
Sbjct: 259 KLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKYVAIKGKGARQKALPLGKW 318

Query: 284 RLWAALIWCWGLVAVAFILPLLQLISYAWTYFAQSWTTQFKEYAINSFTVSISA------ 337
           R W A +   G +    I+PL  +       F   W        + +F   ++       
Sbjct: 319 R-WVAFVLIAGWLLFTVIIPLSGI---GLRTFVSHWGDGVSLLEVLTFENLLNVWDQPSL 374

Query: 338 ---AVVAVLVALVANFYARLQNNRTSVALMRLSS-----------MGYAVPGTVLAIGIL 383
               +  VL+ ++    A       ++A+ R              +  AVPG +  +  L
Sbjct: 375 VRGIINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLVPRAVPGLLAGLSFL 434

Query: 384 VPVLALDHLINDIAKMME-----WGRPGLV-----FSGSLFAIVFALVVRFSAVAIGSIE 433
              L +  L++   K ++     W     +        ++F++  A  V + A  +  I 
Sbjct: 435 WVFLFVPSLLDSALKGIDNPIALWLVDSFIPALRGLRSTIFSVWLAYSVVWMAYGLRLIN 494

Query: 434 SSLSKVSPSLDMAARTMGCHANQMLKRVHLPLIRRGALIAGLLVFIESMKELNAAILLRP 493
           ++L +V P L+ AAR +G   +++ + V LPL+R G + A L+VF+   +E +  + L  
Sbjct: 495 TALLQVGPELEEAARAVGASRSRVTRDVTLPLVRYGLVGAWLMVFLIFEREYSTGVYLLS 554

Query: 494 FNFETLATYVYNYASDERLELAALPA---ILLVLVGL 527
              E + + + +  +   +EL A  +   I LV VGL
Sbjct: 555 PGTEVIGSMIVSMWAAGAVELVAALSFINITLVAVGL 591