Pairwise Alignments

Query, 409 a.a., ammonium transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Ammonia permease from Pseudomonas stutzeri RCH2

 Score =  196 bits (499), Expect = 8e-55
 Identities = 141/421 (33%), Positives = 204/421 (48%), Gaps = 48/421 (11%)

Query: 3   LSITVTELRYALDTFFFLISGALVMWMAAGFAMLEAGLVRSKNTTEILTKNFVLYAIACT 62
           L   V  L +  +T F LI   +V+ M AGFA LE G VR KN    L+K    +A++  
Sbjct: 4   LDSAVQTLVHGSNTLFILIGAVMVLAMHAGFAFLEVGTVRLKNQVNALSKIITDFAVSTL 63

Query: 63  TYLIVGYNIMYVDNTEGGWLPSFGALIGSQADG--ADHSLE-SDFFFQVVFVATAMSVVS 119
            Y  +GY           W+ ++G      AD    DH      FFF + F A   +++S
Sbjct: 64  AYFFIGY-----------WV-AYGVTFMQPADQLVLDHGYALVKFFFLLTFAAAIPAIIS 111

Query: 120 GAVAERMKLWAFLIFSAVLTAFIYPVEGYWTWGGGF--------LSAAGFSDFAGSGIVH 171
           G +AER +    L  + ++ AF+YP      W G F           A F DFAGS +VH
Sbjct: 112 GGIAERARFGPQLCATLLIVAFVYPFFEGLIWNGNFGFQAWLEYQFGASFHDFAGSVVVH 171

Query: 172 LAGASAALAGVLLLGARKGKYGKNGEIYPIPGSNMPLATLGTFILWFGWFGFNGGSQLMV 231
             G   A   V+LLG R G+Y ++G +     SN+P   LG++IL  GWFGFN  S   +
Sbjct: 172 AMGGWLAFGAVILLGRRNGRY-RDGRLVAFAPSNIPFLALGSWILIVGWFGFNVMSAQSI 230

Query: 232 SDFENATSVGKIFLNTNAAAAAGAIAALLVCKTTWGKADLTMVLNGALAGLVAITADPLS 291
                    G + +N+  A   G  AA L      G+ D   + NG LAGLVA+ A    
Sbjct: 231 EGIS-----GLVAVNSLMAMVGGTAAAWLA-----GRNDPGFLHNGPLAGLVAVCAGSDL 280

Query: 292 PSPLYSVAIGAVSGSLVVFSIIGL-DKLKIDDPVGAISVHGVCGFFGLMVVPLSNADATF 350
             P+ ++A GA++G+L V++     ++ KIDD +G   +HG+CG +G +   +    A  
Sbjct: 281 MHPVGALATGAIAGALFVWAFTATQNRWKIDDVLGVWPLHGLCGIWGGVACGIFGQAALG 340

Query: 351 GAQLLGAAVIFAWVFGASL----------VVWGVLKATMGIRVSEEEEMEGMDMHDCGVG 400
           G   LG   + + V G+ L           V+G+LK T GIR+S+EEE  G D+    +G
Sbjct: 341 G---LGGVSLISQVIGSGLGMLVALLGGFGVYGLLKLTTGIRLSQEEEFNGADLSIHRIG 397

Query: 401 A 401
           A
Sbjct: 398 A 398