Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 817 a.a., penicillin-binding 1A transmembrane protein from Sinorhizobium meliloti 1021

 Score =  165 bits (418), Expect = 8e-45
 Identities = 99/251 (39%), Positives = 149/251 (59%), Gaps = 9/251 (3%)

Query: 178 EQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLK---AGRTVQGGST 234
           E+RL+L     P+ +  A +  ED++FYQH G+    + RA+ VNL+   +GR   G ST
Sbjct: 65  ERRLYLPIQAIPDRVKAAFISAEDKNFYQHPGIDVTGLARAIAVNLQNFGSGRRPVGAST 124

Query: 235 LTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADAIHGF 294
           +TQQ+AKN  LSSD+TL RK++EA ++  I+  YSKDRILE YLNE++ G +     +G 
Sbjct: 125 ITQQVAKNFLLSSDQTLDRKIKEAILSFRIEQAYSKDRILELYLNEIFFGLNS----YGI 180

Query: 295 GLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEHDILT 354
             A+  YF + + EL I + A L  + KGP+ Y+P R  E A ERR+ V+  M+E+  +T
Sbjct: 181 AGAALTYFDKSVTELTIAETAYLAALPKGPANYHPFRKVEAAIERRNWVIDRMVENGYVT 240

Query: 355 APEYQQAVTRPLDVQKTAQIASRQPAYF--QQVSIELKEKLGDKFKADSGLRVFTSLDPV 412
             + ++A  +PL V+     A    + F  ++V  ++ +K GDK   + GL V TSLDP 
Sbjct: 241 KADGEEAKQQPLGVKPRRGGAHLFASDFFAEEVRRQIIQKYGDKALYEGGLSVRTSLDPR 300

Query: 413 SQSKLEQAIHD 423
            Q    +A+ D
Sbjct: 301 LQIAARKALQD 311



 Score =  129 bits (325), Expect = 5e-34
 Identities = 102/332 (30%), Positives = 144/332 (43%), Gaps = 32/332 (9%)

Query: 394 GDKFKADSGLRVFTSLDPVSQSKLEQAIHDQIPQLAKTAGKDLEAAAIAVDRHSGEIRAM 453
           G +  A S   VF   D V    LE+A   ++ Q  K  G       +A+D H+G + AM
Sbjct: 401 GKRKSAKSPEEVFGPGDVVYVEPLEEAGEYRLRQPPKVQG-----GLVAMDPHTGRVLAM 455

Query: 454 VGGKRTGYDGFNRVLNASRQIGSLVKPAVYLTALAHPDQYNLATTLEDKPLTLKGSEGSA 513
           VGG   G   FNR   A RQ GS  KP VY  AL   + Y  A+ + D P+ +    G  
Sbjct: 456 VGGFSYGQSEFNRATQAMRQPGSAFKPFVYAAAL--DNGYTPASVILDAPIEIVAG-GQV 512

Query: 514 WTPRNYDRQYRGEVPLYLALAQSLNVPTVALGMKLGIDQVSATLGKLGVNRDEIRPVPSM 573
           W P NY     G   L L + +S N+ TV L   LG++ V+    + G+  D++ P+ +M
Sbjct: 513 WRPENYGGGSAGPSTLRLGIEKSRNLMTVRLANDLGMNIVAEYAERFGI-YDKMAPLLAM 571

Query: 574 LLGSFSLTPYQVAQMYQTLTNSGKKAPLSALRSVLDLEGNVLYESLPRV----------- 622
            LGS   T  ++   Y  + N GK+   S +  + D  G  ++    R            
Sbjct: 572 SLGSGETTVLRLVSAYAVIANGGKQIKPSLIDRIQDRYGKTIFRHEDRACENCNADDWEA 631

Query: 623 ----------SQAVDQQAAWLTTYAMKQGVQEGTGRYLNAQFSSAALAGKTGTTNDNRDS 672
                      Q +D   ++  T  M+  V  GT            +AGKTGTTND +D+
Sbjct: 632 QEEPVLIDNREQVLDPMTSYQITSMMEGVVARGTA--AGKIKLDRPVAGKTGTTNDEKDA 689

Query: 673 WFVGVDGREVTTIWLGRDDNQPTKLTGASGAL 704
           WFVG     V  ++LG DD  P       G L
Sbjct: 690 WFVGYTPDLVAGLYLGFDDPAPLGRGATGGGL 721