Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 846 a.a., penicillin-binding protein 1A (RefSeq) from Shewanella amazonensis SB2B

 Score =  162 bits (409), Expect = 9e-44
 Identities = 88/256 (34%), Positives = 149/256 (58%), Gaps = 5/256 (1%)

Query: 171 MLEKDSPEQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQ 230
           ++ +   ++R+ ++ +  P+ L+ A L TED  FY+H G+ P+ I RA  V    G   Q
Sbjct: 57  LISQYGEKRRIPMKLEDVPKPLLQAFLATEDARFYEHQGIDPIGIIRAAFVLAATGEKKQ 116

Query: 231 GGSTLTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADA 290
           G ST+TQQ+A+N FL+ D+T+ RK++E +++  I+   +KD ILE Y+N +YLGQ     
Sbjct: 117 GASTITQQVARNFFLTRDKTIIRKVKEIFISFHIEELLTKDEILELYVNRIYLGQRA--- 173

Query: 291 IHGFGLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEH 350
            +G G A+++Y+G+ L++L + +LA++ G+ K PS  NP+   ERA  RR++VL  M E 
Sbjct: 174 -YGVGAAAQVYYGKDLKDLSLAELAVIAGLPKAPSTLNPITSPERAMSRRNIVLMRMREV 232

Query: 351 DILTAPEYQQAVTRPLDVQ-KTAQIASRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSL 409
             +   EYQ A++ P       A+I    P   +     + +K G++     G  V+T++
Sbjct: 233 GYINDSEYQLAISEPNTASYHGAEIDLYVPYVSEMARDYMIQKYGEEEAYTGGYSVYTTV 292

Query: 410 DPVSQSKLEQAIHDQI 425
           D   Q K ++A+ + I
Sbjct: 293 DSELQLKAQKALRNNI 308



 Score =  132 bits (332), Expect = 8e-35
 Identities = 95/316 (30%), Positives = 146/316 (46%), Gaps = 60/316 (18%)

Query: 435 DLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPAVYLTALAHPDQYN 494
           ++ +A +++D H+G IRA+VGG       FNRV  A RQ+GS +KP +Y   L     Y 
Sbjct: 423 EVSSAIVSLDPHNGAIRALVGGYSFSQSQFNRVTQAKRQLGSNIKPFIYAATLEKG--YT 480

Query: 495 LATTLEDKPLTLKG-SEGSAWTPRNYDRQYRGEVPLYLALAQSLNVPTVALGMKLGIDQV 553
           LAT + + P+     S+G+AW P+N    Y G   L + LAQS+NV  V      GID  
Sbjct: 481 LATLINNAPINKPDLSQGTAWRPKNSPDTYTGPTRLRVGLAQSINVMAVRALRYSGIDAT 540

Query: 554 SATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGKKAPLSALRSVLDLEGN 613
              L + G + +++    S+ LGS S+TP QV + +    N G       +  V    GN
Sbjct: 541 VELLTRFGFDPNDLPRNESLALGSPSVTPLQVVRAFTVFANGGYLVEPFFIDRVESATGN 600

Query: 614 VLYESLPRV----------------------------------------------SQAVD 627
           ++ ++ P +                                              ++ + 
Sbjct: 601 LVEKTQPALACEAPIPEEVSEDMATTEASAPPAMLNAATPADPSSQCGDPAARYANRVIS 660

Query: 628 QQAAWLTTYAMKQGV------QEGTGRYLNAQFSSAAL-----AGKTGTTNDNRDSWFVG 676
           +Q A+L T A+K  +       +GTG    A  ++  L     AGKTGTTN++RD+WF G
Sbjct: 661 EQNAFLITEALKSVIWGGGDFSKGTGWNGTAWRAARLLKRHDIAGKTGTTNESRDTWFSG 720

Query: 677 VDGREVTTIWLGRDDN 692
            +   VTT+W+G DD+
Sbjct: 721 FNPDLVTTVWVGFDDH 736