Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 779 a.a., peptidoglycan glycosyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score =  674 bits (1740), Expect = 0.0
 Identities = 359/775 (46%), Positives = 493/775 (63%), Gaps = 7/775 (0%)

Query: 3   RKSSNRS--RGRKARSGKSASSSKLQIWLGRIWSIGWKLALTLAAVLVFIGIYLDSMIKQ 60
           R S  R+  +G  A+S  SA +      L RIWS  WKL L +  +    GIYLD  I +
Sbjct: 6   RNSGKRAPAKGASAKSRTSAKARNKPGILRRIWSFLWKLTLVVLVLCAAYGIYLDQQIAR 65

Query: 61  RFEGQLFDLPTVVYARILTLEPGNGLSLQELRNELDVLNYRKVAQPRFPGEYASSSSRIE 120
           +FEGQ + LP  +Y+R + L PG  +S  +L  EL +L YRKVA PR  GE+++S++RI+
Sbjct: 66  KFEGQKWHLPAQIYSRSMALYPGAAVSHHQLLAELQLLGYRKVANPRQVGEFSASATRID 125

Query: 121 LIRRPFEFADGPEPDRRVMLTFDGSGLNKIESLEQKRELGYLRLEPKLMGMLEKDSPEQR 180
           L RRPF    G +   RVM+ FD  G++ +     KREL    LEP L+  L  D  E R
Sbjct: 126 LWRRPFLHPLGSQDAARVMIAFDSQGVSTVSRHGDKRELAVFHLEPMLLDRLIADDGEDR 185

Query: 181 LFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQGGSTLTQQLA 240
           LF+ R + P+ +V+ALL+ EDR FY+H GV+P AI RA  VN+ AGRTVQGGSTLTQQLA
Sbjct: 186 LFVPRREVPDTMVEALLLVEDRSFYEHHGVNPFAILRAAFVNISAGRTVQGGSTLTQQLA 245

Query: 241 KNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADAIHGFGLASRL 300
           KN FLSS+R+L RK+REA MA+IID+RYSKD ILEAYLNEVY+GQ  +  +HG GLAS+ 
Sbjct: 246 KNFFLSSERSLIRKVREALMAIIIDFRYSKDEILEAYLNEVYMGQDKSRGVHGMGLASQF 305

Query: 301 YFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEHDILTAPEYQQ 360
           YFG+PL EL   Q A L+ ++KGPSYYNP RY  RA+ERRDLVL+L+ME   ++  ++Q 
Sbjct: 306 YFGRPLTELTTAQQAFLIAVIKGPSYYNPWRYPARAQERRDLVLRLLMESGKISVNDFQI 365

Query: 361 AVTRPLDVQKTAQ-IASRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSLDPVSQSKLEQ 419
           A   PL ++   + +  R PA++ QV  EL  + GD    +SG++V+T+LDP++Q   E+
Sbjct: 366 AAESPLGLRPEGRPVHQRMPAFYTQVKKELALRWGDSLLNESGIKVYTTLDPIAQEAAEK 425

Query: 420 AIHDQIPQLAKTAGKDLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVK 479
           A+ + + ++ K   K+L+AA +  D+  G I AMVG +   ++G+NRV    R IGSLVK
Sbjct: 426 AVKEVMGRIGKDT-KELQAAMVVTDKFGGGIAAMVGDRNPSFEGYNRVSEMRRPIGSLVK 484

Query: 480 PAVYLTALAHPDQYNLATTLEDKPLTLKGSEGSAWTPRNYDRQYRGEVPLYLALAQSLNV 539
           P VY+TAL     YNL T+L+D+PLT+    G +W+P NYD+ + G+VPL  A+ +SLNV
Sbjct: 485 PFVYMTAL-EDSNYNLMTSLKDEPLTVTNKHGQSWSPMNYDKTFSGQVPLMRAMYKSLNV 543

Query: 540 PTVALGMKLGIDQVSATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGKKA 599
           PTV LG+ +G+D V  TL   G   + I P PSMLLG+   +P  VAQ+YQTL ++G+  
Sbjct: 544 PTVNLGLAVGVDAVINTLDDAGWRGEAINPYPSMLLGAVDGSPLMVAQIYQTLADNGRYR 603

Query: 600 PLSALRSVLDLEGNVLYESLPRVSQAVDQQAAWLTTYAMKQGVQEGTGRYLNAQFSSAAL 659
            LS +  VLD+    +  S     Q+++  AA+L+ Y M + V EGTG  L   F +  L
Sbjct: 604 QLSTVTDVLDMNNEAILASRLPSEQSLEPAAAYLSQYIMTRVVSEGTGARLGRAFPNVTL 663

Query: 660 AGKTGTTNDNRDSWFVGVDGREVTTIWLGRDDNQPTKLTGASGALRVYAQYLKYRIPEKL 719
           AGKTGT+ND+RDSWF G D R V  +W+GRDDN  TKL GASGA+ +Y  +L+ R P  L
Sbjct: 664 AGKTGTSNDSRDSWFAGFDERNVAAVWVGRDDNGKTKLVGASGAMAIYQAFLEARPPVAL 723

Query: 720 QLPWPEGITTFGFAKQTQGGLKLDCDNAFKLPIWDNQQQLKQQCENRPTEWIKKL 774
           ++  P+ +   G+       L+  C  A  LP      +  Q C  +P  W +K+
Sbjct: 724 RMTPPDDVVQ-GYFDLNGNALEKGCPGAVALPAKAGSWRPAQNC-GKPLSWWQKI 776