Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 831 a.a., Penicillin-binding protein 1A (NCBI) from Rhodospirillum rubrum S1H

 Score =  156 bits (394), Expect = 5e-42
 Identities = 90/239 (37%), Positives = 143/239 (59%), Gaps = 9/239 (3%)

Query: 178 EQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLK---AGRTVQGGST 234
           E+R+++  +  P+ + DA L  ED++FY H GV  + + RA++ NL+   +GR   G ST
Sbjct: 62  EKRVYVPINAIPQKVKDAFLSAEDKNFYTHSGVDFVGLFRAVLTNLQNYGSGRRPVGAST 121

Query: 235 LTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADAIHGF 294
           +TQQ+AKN  L+++ +  RK++EA +A  I+  +SKD ILE YLNE+YLG S     +G 
Sbjct: 122 ITQQVAKNFLLTNEVSFDRKVKEAILAFRIEEAFSKDHILELYLNEIYLGFSS----YGV 177

Query: 295 GLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEHDILT 354
             A+  YF + L EL I ++A L  + K P+ YNP+R  + A+ RRD V+  M+E D +T
Sbjct: 178 AAAAVNYFNKSLDELTIGEVAFLAALPKAPNNYNPVRKNDAAKARRDWVVDRMVEDDHIT 237

Query: 355 APEYQQAVTRPLDVQK--TAQIASRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSLDP 411
             E + A   PL+V+     Q+      + ++V  +L+ + G++     GL V T+LDP
Sbjct: 238 QAEGEAAKAEPLEVRSRDETQLVRHADFFSEEVRRQLQSRYGEEALYKGGLYVRTTLDP 296



 Score =  132 bits (331), Expect = 1e-34
 Identities = 102/331 (30%), Positives = 154/331 (46%), Gaps = 37/331 (11%)

Query: 435 DLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPAVYLTALAHPDQYN 494
           ++E A +A+D H+G + AMVGG       FNR + A RQ GS  KP VYL AL H   Y 
Sbjct: 434 NVEGALVAMDPHTGRVMAMVGGFAPERSEFNRAIQAKRQPGSSFKPFVYLAALDH--GYT 491

Query: 495 LATTLEDKPLTLKGSEGS-AWTPRNYDRQYRGEVPLYLALAQSLNVPTVALGMKLGIDQV 553
            AT + D P       G   W P+NY  Q+ G   L   +  S N+ TV L   +G+D V
Sbjct: 492 PATIILDAPFVYDPGPGQPLWKPKNYSGQFYGPSTLRRGVEMSRNLMTVRLANAVGMDVV 551

Query: 554 SATLGKLGVNRDEIRPVPSML---LGSFSLTPYQVAQMYQTLTNSGKKAPLSALRSVLDL 610
           +    + GV    +  +P +L   LG+   T   +   Y  L N G++   + +  + D 
Sbjct: 552 AEYAERFGV----VHTMPRVLAASLGAVETTVMDMTTAYAMLVNGGRRIAPTLIDRIQDR 607

Query: 611 EGNVLYESLPR----------VSQAV-----------DQQAAWLTTYAMKQGVQEGTGRY 649
            G  +Y    R            QAV           D  +A+     ++  VQ GTG  
Sbjct: 608 TGTTVYRHDERPCDACKASQWAGQAVPAVVDNREIMTDPLSAYQIVSILQGVVQRGTGGK 667

Query: 650 LNAQFSSAALAGKTGTTNDNRDSWFVGVDGREVTTIWLGRDDNQP--TKLTGASGALRVY 707
           + A   S  +AGKTGT+ND+ D+WFVG     V  +++G D+ +   +   G++ A  ++
Sbjct: 668 VQAVGKS--VAGKTGTSNDSLDTWFVGFSPDLVCGVFVGFDEPKSLGSHEAGSTTAAPIF 725

Query: 708 AQYLKYRIPEKLQLPW--PEGITTFGFAKQT 736
             ++K  + +K  +P+  PEGI       QT
Sbjct: 726 TTFMKEALADKPDIPFRVPEGIKFVRIDPQT 756