Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 789 a.a., penicillin-binding protein 1B (RefSeq) from Shewanella loihica PV-4

 Score =  672 bits (1733), Expect = 0.0
 Identities = 361/777 (46%), Positives = 488/777 (62%), Gaps = 8/777 (1%)

Query: 3   RKSSNRSRGRKARSG-KSASSSKLQI---WLGRIWSIGWKLALTLAAVLVFIGIYLDSMI 58
           RKS+N   G    S  KSAS S       W  RIWS+ WKL L L A +    IYLD +I
Sbjct: 13  RKSTNSKAGNSQSSKRKSASKSTATARPGWGRRIWSLSWKLGLILFAAMTIYSIYLDQII 72

Query: 59  KQRFEGQLFDLPTVVYARILTLEPGNGLSLQELRNELDVLNYRKVAQPRFPGEYASSSSR 118
            ++FEGQ + LP  V++R + L PG  +S  +L  EL +L YRKVA PR  GE+++S ++
Sbjct: 73  ARKFEGQKWHLPAQVFSRSMALYPGAAVSHDQLIAELKLLGYRKVANPRQVGEFSASKTK 132

Query: 119 IELIRRPFEFADGPEPDRRVMLTFDGSGLNKIESLEQKRELGYLRLEPKLMGMLEKDSPE 178
           ++L RRPF    G +  +R+M++FD  G+  +      REL    LEP L+  +     E
Sbjct: 133 VDLWRRPFLHPQGSQEAQRMMISFDSQGVASVARSSDHRELAVFHLEPVLLDRMITGDGE 192

Query: 179 QRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQGGSTLTQQ 238
            RLF+  D+ P+ +VDAL++ EDR FY+H GV+P AI RA +VN+ AGRTVQGGSTLTQQ
Sbjct: 193 DRLFVATDKIPKAIVDALILVEDRSFYEHHGVNPFAIIRAAMVNISAGRTVQGGSTLTQQ 252

Query: 239 LAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADAIHGFGLAS 298
           LAKN FLSS+R++ RKLREA MA+IID+RY KD ILEAYLNEVY+GQ  + A+HG GLAS
Sbjct: 253 LAKNFFLSSERSIIRKLREALMAIIIDFRYDKDEILEAYLNEVYMGQDKSRAVHGMGLAS 312

Query: 299 RLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEHDILTAPEY 358
           + YFG+P+ EL + Q A LV  +KGPSYYNP R+ ERA+ERRDLVL+L+ME   L   +Y
Sbjct: 313 QFYFGRPIAELTLPQQAFLVAAIKGPSYYNPWRFPERAQERRDLVLRLLMESGQLPVAQY 372

Query: 359 QQAVTRPLDVQKTAQ-IASRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSLDPVSQSKL 417
           + AV  PL V+K ++ +  + PA+F  V  EL  + GD     SG++V+T+LDP++Q   
Sbjct: 373 KAAVESPLGVRKASKPVHQKLPAFFAVVRGELSRRFGDSLLQQSGIKVYTTLDPLAQEAA 432

Query: 418 EQAIHDQIPQLAKTAGKDLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSL 477
           EQA+   +  L +   K L+   +  D++S  I AMVG K   Y GFNR +   R IGSL
Sbjct: 433 EQAVRSTMKNL-EQRDKALQVGMVVTDKYSAGIAAMVGDKVPSYQGFNRAVEIRRPIGSL 491

Query: 478 VKPAVYLTALAHPDQYNLATTLEDKPLTLKGSEGSAWTPRNYDRQYRGEVPLYLALAQSL 537
           +KP VY TAL H D+Y LAT L+D+P+TL  S+G  W+P+N ++Q+ GEVPL  A  +S+
Sbjct: 492 IKPFVYATALTHGDKYTLATPLKDEPITLTNSQGKTWSPQNVNKQFSGEVPLMTAFKKSM 551

Query: 538 NVPTVALGMKLGIDQVSATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGK 597
           NVPTV LGM +G D V+ TL K G + + I   PSMLLG+ + +P  VAQ+YQTL ++G+
Sbjct: 552 NVPTVNLGMAIGTDAVATTLAKSGWD-ETIPEYPSMLLGAVNGSPLMVAQVYQTLADNGR 610

Query: 598 KAPLSALRSVLDLEGNVLYESLPRVSQAVDQQAAWLTTYAMKQGVQEGTGRYLNAQFSSA 657
              L+A+  VLD +   L  S     QA+   + +L  +AM Q VQ GT   L   F   
Sbjct: 611 YRQLNAVTHVLDADNQPLSASQRGADQAISVASDFLVQHAMTQVVQSGTATKLGQAFPGV 670

Query: 658 ALAGKTGTTNDNRDSWFVGVDGREVTTIWLGRDDNQPTKLTGASGALRVYAQYLKYRIPE 717
            LAGKTGT+ND+RDSWF G D R V  +W+G DDN  T L G+SGA+ VY  +LK R P 
Sbjct: 671 TLAGKTGTSNDSRDSWFAGFDERNVAAVWVGLDDNGKTSLYGSSGAMAVYQAFLKQRAPI 730

Query: 718 KLQLPWPEGITTFGFAKQTQGGLKLDCDNAFKLPIWDNQQQLKQQCENRPTEWIKKL 774
            L+     G+ +  F  +T    + +C N   +P      +  + C   P  W +KL
Sbjct: 731 SLRRTPVNGVVSGYFDAKTGVAKQGNCGNVVAVPALAESYRPAKNC-GEPLSWWQKL 786