Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 861 a.a., 1A family penicillin-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  164 bits (415), Expect = 2e-44
 Identities = 87/256 (33%), Positives = 153/256 (59%), Gaps = 5/256 (1%)

Query: 171 MLEKDSPEQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQ 230
           ++ +   ++R+ +  +Q P+ L++A+L TED  F++H G+ P+ I RA V+    G+  Q
Sbjct: 57  LISQFGEKRRIPVEYEQVPQQLINAVLDTEDARFFEHKGIDPIGIIRAAVILATTGKKSQ 116

Query: 231 GGSTLTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADA 290
           G ST+TQQ+A+  FLS ++T  RK++E ++AL I+   SK  IL  YLN  +LG    + 
Sbjct: 117 GASTITQQVARGFFLSREKTYIRKIKEIFLALKIEQALSKKEILTLYLNRSFLG----NR 172

Query: 291 IHGFGLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEH 350
            +G G A+++Y+G+ L+EL + ++A++ G+ + PS  NP+R   RA  RR+ VL  M+E 
Sbjct: 173 AYGVGAAAQVYYGKELEELTLPEMAMIAGLPQAPSAANPIRNPARAMNRRNWVLSRMLEK 232

Query: 351 DILTAPEYQQAVTRPLDVQ-KTAQIASRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSL 409
           + +T  EYQ+A+  P+  +   A++    P   +     L EKLG++     G  V+T++
Sbjct: 233 ENITPDEYQEAIRAPITAKYHGAEVELYAPYISEMARDYLVEKLGEEEAYTGGYNVYTTV 292

Query: 410 DPVSQSKLEQAIHDQI 425
           D   Q   ++A+ + +
Sbjct: 293 DSRLQMLAQEALRNNV 308



 Score =  124 bits (310), Expect = 3e-32
 Identities = 99/340 (29%), Positives = 148/340 (43%), Gaps = 81/340 (23%)

Query: 424 QIPQLAKTAGKDLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPAVY 483
           QIP++A        +A +++D   G IR +VGG       +NRV  A RQ+GS +KP +Y
Sbjct: 423 QIPEVA--------SAIVSLDPKDGAIRTLVGGYSFHTSQYNRVTQAKRQLGSNIKPFIY 474

Query: 484 LTALAHPDQYNLATTLEDKPLTLKG-SEGSAWTPRNYDRQYRGEVPLYLALAQSLNVPTV 542
             AL     Y LAT + + P+      +G+AW P+N   +Y G   L + LAQS+NV +V
Sbjct: 475 TGALEKG--YTLATLINNAPINNADIRQGTAWRPKNSPDKYTGPTRLRVGLAQSINVMSV 532

Query: 543 ALGMKLGIDQVSATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGKKA--- 599
                 G++    TL K G +RD++    S+ LGS S+TP QV   +    N G +    
Sbjct: 533 RAMRYTGLESAIDTLVKFGFDRDDLPQNESLALGSPSVTPLQVVTAFSVFANGGYRVEPY 592

Query: 600 ------------------------------------PLSALR----------------SV 607
                                               P +A+                  V
Sbjct: 593 FIDHIDNAYEQTVEEASPTLACKPELIQPQTLPTDDPFAAMAQELPKHEVANQEVEGLEV 652

Query: 608 LDLEGNVLYESLPRVS----QAVDQQAAWLTTYAMKQGV------QEGTGRYLNAQFSSA 657
              E N    S P  +    Q + +Q A+L T A+K  +       +GTG    A  ++ 
Sbjct: 653 ASQEANAEDPSCPSTARHAPQIISKQTAFLITEALKSVIWGGGDWSKGTGWNGTAWRAAR 712

Query: 658 A-----LAGKTGTTNDNRDSWFVGVDGREVTTIWLGRDDN 692
                 +AGKTGTTN+++D+WF G      TT+W+G DD+
Sbjct: 713 VVNRHDIAGKTGTTNESKDTWFSGFTPTLATTVWVGFDDH 752