Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 768 a.a., penicillin-binding protein 1B (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  668 bits (1723), Expect = 0.0
 Identities = 352/746 (47%), Positives = 481/746 (64%), Gaps = 4/746 (0%)

Query: 30  GRIWSIGWKLALTLAAVLVFIGIYLDSMIKQRFEGQLFDLPTVVYARILTLEPGNGLSLQ 89
           G IWS+ WKLAL   AV+ F GIYLD +I ++FEGQ + LP  V++R + L PG  +S  
Sbjct: 23  GHIWSLTWKLALIGLAVVTFYGIYLDQIIARKFEGQKWHLPAQVFSRSMALYPGAAVSHP 82

Query: 90  ELRNELDVLNYRKVAQPRFPGEYASSSSRIELIRRPFEFADGPEPDRRVMLTFDGSGLNK 149
           +L  EL +L YRKVA PR  GE+++SS++IEL RRPF   +G +P++RVM+TFD  G++ 
Sbjct: 83  QLMAELKLLGYRKVANPREVGEFSASSTKIELWRRPFLHPEGDQPEQRVMITFDSEGVSA 142

Query: 150 IESLEQKRELGYLRLEPKLMGMLEKDSPEQRLFLRRDQFPEVLVDALLVTEDRDFYQHDG 209
           I  +E KR+L    LEP L+  +     E RLF+  ++ P+ +V ALL+ EDR FY+H G
Sbjct: 143 IARMEDKRQLAVFHLEPVLLDRMITGDGEDRLFVSTEEMPKPIVQALLLVEDRSFYEHHG 202

Query: 210 VSPLAIGRAMVVNLKAGRTVQGGSTLTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYS 269
           V+P AI RA  VN+ AGRTVQGGSTLTQQLAKN FLSS+R+L RK+REA MA+IID+RYS
Sbjct: 203 VNPFAILRAAFVNITAGRTVQGGSTLTQQLAKNFFLSSERSLLRKVREALMAVIIDFRYS 262

Query: 270 KDRILEAYLNEVYLGQSGADAIHGFGLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNP 329
           KD ILEAYLNEVY+GQ  + A+HG GLAS+ YFG+P+ EL   Q A LV  +KGPSYYNP
Sbjct: 263 KDEILEAYLNEVYMGQDKSRAVHGMGLASQFYFGRPIGELTTAQQAFLVAAIKGPSYYNP 322

Query: 330 MRYAERARERRDLVLKLMMEHDILTAPEYQQAVTRPLDVQKTAQ-IASRQPAYFQQVSIE 388
            RY ER+ ERRDLVL+L+ME   L   +Y+ AV  PL ++   + +  + P+++  V  E
Sbjct: 323 WRYPERSLERRDLVLRLLMESGELNTAQYKVAVESPLGLRNANKPVHQKLPSFYALVKQE 382

Query: 389 LKEKLGDKFKADSGLRVFTSLDPVSQSKLEQAIHDQIPQLAKTAGKDLEAAAIAVDRHSG 448
           + ++ GD     SG++++T+LDP++Q   E A+      L K   K L+   +  D+++G
Sbjct: 383 VNQRYGDALLKQSGVKIYTTLDPMAQEAAEIAVTQTFKSLDK-GNKSLQIGMVVTDKYTG 441

Query: 449 EIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPAVYLTALAHPDQYNLATTLEDKPLTLKG 508
            I AMVG K  G+DG+NR +   R IGSL+KP VY TALA   Q+ LA+ L+D+P+TLK 
Sbjct: 442 GIAAMVGDKTPGFDGYNRAVEIRRPIGSLIKPFVYATALAPNSQFTLASPLKDQPITLKN 501

Query: 509 SEGSAWTPRNYDRQYRGEVPLYLALAQSLNVPTVALGMKLGIDQVSATLGKLGVNRDEIR 568
            +G  W+P+N+D+ + G+V L  AL +S+NVPTV LG+ +G+D V  TL K G   + + 
Sbjct: 502 EQGKTWSPQNFDKTFSGQVSLLTALKKSMNVPTVNLGIAVGVDAVVTTLAKSGW-EEPLN 560

Query: 569 PVPSMLLGSFSLTPYQVAQMYQTLTNSGKKAPLSALRSVLDLEGNVLYESLPRVSQAVDQ 628
             PSMLLG+ + +P  VAQ+YQTL +SG    L+ + +VLD +   L  +     QA+  
Sbjct: 561 EYPSMLLGAVNGSPLMVAQVYQTLADSGAYRKLTTVTAVLDSDNQPLPVTRSAKEQAITP 620

Query: 629 QAAWLTTYAMKQGVQEGTGRYLNAQFSSAALAGKTGTTNDNRDSWFVGVDGREVTTIWLG 688
              +L  YAM+Q V+ GT   L   F   ALAGKTGT+ND+RDSWF G D R V  IW+G
Sbjct: 621 DTDFLVQYAMQQVVRSGTATRLGNAFPGVALAGKTGTSNDSRDSWFAGFDERNVAAIWVG 680

Query: 689 RDDNQPTKLTGASGALRVYAQYLKYRIPEKLQLPWPEGITTFGFAKQTQGGLKLDCDNAF 748
           RDDN  T L G+SGA+ VY  +LK R P  L+   P G+    F + T    +  C N  
Sbjct: 681 RDDNGKTSLYGSSGAMAVYQAFLKERPPIGLRSIPPSGVIKGYFDRDTGEAKEAGCSNTE 740

Query: 749 KLPIWDNQQQLKQQCENRPTEWIKKL 774
            LP         + C   P +W +K+
Sbjct: 741 ALPALRGTYNPAKNC-GEPLQWWQKI 765