Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 839 a.a., penicillin-binding protein 1A (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  160 bits (406), Expect = 2e-43
 Identities = 89/272 (32%), Positives = 156/272 (57%), Gaps = 5/272 (1%)

Query: 171 MLEKDSPEQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQ 230
           ++ +   ++R+ L+ ++ P+ L+ A L TED  FY+H G+ P+ + RA  V L  G   Q
Sbjct: 57  LISQFGEKRRIPLKLEEVPKPLLQAFLATEDARFYEHGGIDPVGVMRAATVMLTTGEKKQ 116

Query: 231 GGSTLTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADA 290
           G ST+T Q+A+N FL+ D+T+ RK++E +++  I+   +KD ILE Y+N +YLGQ     
Sbjct: 117 GASTITMQVARNFFLTRDKTIIRKVKEIFISYHIEQLLTKDEILELYVNRIYLGQRA--- 173

Query: 291 IHGFGLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEH 350
            +G G A+++YFG+ +Q+L + +++++ G+ K PS  NP+    RA  RR++VL  M E 
Sbjct: 174 -YGVGAAAQVYFGKNVQDLTLSEMSMIAGLPKAPSTLNPITSPSRALARRNVVLMRMNEV 232

Query: 351 DILTAPEYQQAVTRPLDVQ-KTAQIASRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSL 409
             ++  EYQ A+  PL  +   A+I    P   +     + +K G++    +G  V+T++
Sbjct: 233 GYISKAEYQAALQEPLVAKYHGAEIDLYAPYISEMARDYMVQKYGEEEAYTNGYNVYTTI 292

Query: 410 DPVSQSKLEQAIHDQIPQLAKTAGKDLEAAAI 441
               Q   +QA+ + +    +  G    AAA+
Sbjct: 293 SSDLQLLAQQALRNNVYAYDERHGYRGPAAAL 324



 Score =  134 bits (338), Expect = 2e-35
 Identities = 99/324 (30%), Positives = 152/324 (46%), Gaps = 61/324 (18%)

Query: 422 HDQIPQLAKTAGKDLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPA 481
           H Q+ Q+ + A     +A +++D  +G IR +VGG       +NRV  A RQ+GS +KP 
Sbjct: 415 HLQLSQVPEVA-----SATVSLDPENGAIRTLVGGYSFSQSQYNRVTQAKRQLGSNIKPF 469

Query: 482 VYLTALAHPDQYNLATTLEDKPLTLKG-SEGSAWTPRNYDRQYRGEVPLYLALAQSLNVP 540
           +Y  AL     + LAT + + P+     S+G+AW P+N    Y G   L + LAQS+NV 
Sbjct: 470 IYAAALEKG--FTLATLINNAPINKPDISQGTAWRPKNSPDIYGGPTRLRVGLAQSINVM 527

Query: 541 TVALGMKLGIDQVSATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGKKAP 600
           +V     +G+D   A L K G + +++    S+ LGS S+TP QVA  +    N G    
Sbjct: 528 SVRAMRHIGLDAAIAELTKFGFDPNDLPRNESLALGSPSVTPLQVATAFNVFANGGFLVE 587

Query: 601 LSALRSVLDLEGNVLYESLPRVS------------------------------------- 623
              +  V D  GNV+ ++ P ++                                     
Sbjct: 588 PFYIERVEDSFGNVIEKANPTLACKSNNSHVQPSSDPMSFGEPTAQTDAAVAHCFEQTGR 647

Query: 624 ---QAVDQQAAWLTTYAMKQGV------QEGTGRYLNAQFSSAAL------AGKTGTTND 668
              Q + +Q A+L T A+K  +       +GTG +    + +A L      AGKTGTTN+
Sbjct: 648 YAPQIISEQTAFLITEALKSVIWGGGDWSKGTG-WQGTAWRAAQLIKRHDIAGKTGTTNE 706

Query: 669 NRDSWFVGVDGREVTTIWLGRDDN 692
           +RD+WF G      +T W+G DD+
Sbjct: 707 SRDTWFSGFGPTLTSTFWVGFDDH 730