Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 807 a.a., penicillin-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  158 bits (400), Expect = 1e-42
 Identities = 98/275 (35%), Positives = 151/275 (54%), Gaps = 26/275 (9%)

Query: 178 EQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQGGSTLTQ 237
           E+R  +     P  L  A L  ED  FY+HDG+ P+AIGRA + NL+AG   QGGST+TQ
Sbjct: 65  EKRFLVALGDMPARLPMAFLAAEDDSFYRHDGIDPVAIGRAFIKNLQAGSIKQGGSTITQ 124

Query: 238 QLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADAIHGFGLA 297
           Q+ K + LSS+R+  RK++EA +A  ++   +KD IL  YLN++YLG  GA   +G   A
Sbjct: 125 QIVKRLLLSSERSYERKIKEAILAYRLERYLTKDEILTIYLNQIYLG-GGA---YGVESA 180

Query: 298 SRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEHDILTAPE 357
           +R YFG+ + EL I + A+L G+ + PS YNP R  E  ++R+  VL+ M E   ++  E
Sbjct: 181 ARTYFGKHVNELSIAECAVLGGLPQAPSKYNPFRDPEATKQRQLYVLRRMFELGWISREE 240

Query: 358 YQQAVTRPLDVQKTAQIASRQPAYFQQVSIELKEKLGDKFKAD----------------- 400
           ++ AV  PL  +   +   R  A++ +   E++ +L D F  D                 
Sbjct: 241 HEAAVHEPLVYKSMDESIGRAGAWYVE---EVRRQLIDFFSEDNVHRLGLKIDRYGEDAV 297

Query: 401 --SGLRVFTSLDPVSQSKLEQAIHDQIPQLAKTAG 433
             +GL+V T++ P  Q   E+A+ + +    +  G
Sbjct: 298 YEAGLQVTTAMMPEHQIAAERALREGLESATRRHG 332



 Score =  137 bits (346), Expect = 2e-36
 Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 8/289 (2%)

Query: 425 IPQLAKTAGKDLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPAVYL 484
           + QLA     D++ A ++++  +G++ A+VGG       FNR   A RQ GS  KP VY 
Sbjct: 448 VVQLALEQYPDVQGAIVSIEPQTGDVVALVGGYSFTDSQFNRATQARRQPGSSFKPIVYS 507

Query: 485 TALAHPDQYNLATTLEDKPLT-LKGSEGSAWTPRNYDRQYRGEVPLYLALAQSLNVPTVA 543
            AL   + +   + + D P+  +       W P N++  + G + L  ALA+S N+ T+ 
Sbjct: 508 AAL--DNGFTAGSVVLDAPVVYINEYTDKVWRPENFEGNFAGPMLLRTALAKSRNLCTIR 565

Query: 544 LGMKLGIDQVSATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGKKAPLSA 603
           +  ++GI  +      LG+       + S+ LG+ +++P  +AQ Y    N G+ +    
Sbjct: 566 VAQQIGIPAIIERAKALGLEPHFPNEL-SVSLGAVAVSPLNMAQAYTAFANEGRVSTPRM 624

Query: 604 LRSVLDLEGNVLYESLPRVSQAVDQQAAWLTTYAMKQGVQEGTGRYLNAQFSSAALAGKT 663
           +  + D  G  LY   P + +A+  Q A++    +K+ VQ+GT     A+     +AGKT
Sbjct: 625 IVEIKDAWGETLYRRDPELREAISPQNAFVMASLLKEVVQDGTA--TRAKALGRPVAGKT 682

Query: 664 GTTNDNRDSWFVGVDGREVTTIWLGRDDNQPTKL--TGASGALRVYAQY 710
           GTTND +D+WF+G     VT +++G D   P     TG   AL V+  Y
Sbjct: 683 GTTNDEKDAWFMGFSPYLVTGVYIGYDQVAPMGRFETGGRAALPVFVTY 731