Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 772 a.a., penicillin-binding protein 1C (PBP-1c) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  167 bits (423), Expect = 2e-45
 Identities = 149/534 (27%), Positives = 240/534 (44%), Gaps = 68/534 (12%)

Query: 176 SPEQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQGGSTL 235
           S  Q  F  R+  PE + + L+  ED+ FY H GV+P AIGRA   N+K  R V GGSTL
Sbjct: 61  SDGQWRFPPRNTTPEKIKECLITFEDKHFYHHWGVNPFAIGRAFYQNVKNKRIVSGGSTL 120

Query: 236 TQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADAIHGFG 295
           T Q  + +  +  RT   KL E   A  +++R SK+ IL  Y++    G +    + G  
Sbjct: 121 TMQTIR-LARNESRTFREKLIEMIWATRLEFRASKEEILSMYISHAPFGGN----VVGLD 175

Query: 296 LASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEHDILTA 355
            A+  YFG    +L   + A+L  +   P+  +  +  +   ++R+ +LK ++E   + +
Sbjct: 176 AAAWRYFGHSADDLSWAESAMLAVLPNAPAMIHLSKGRKTLLDKRNRLLKQLLEKKTIDS 235

Query: 356 PEYQQAVTRPL--DVQKTAQIASRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSLDPVS 413
             Y+ A++ PL  +     QIA    + F Q      E+ G+                 S
Sbjct: 236 STYELAISEPLPDEPHPLPQIAPYLVSRFYQ------ERNGE----------------YS 273

Query: 414 QSKLEQAIHDQIPQLAKTAGKDL------EAAAIAVDRHSGEIRAMVGGKRTGY-DGFNR 466
           +S + + I  QI  LA+    +         A + +D  S ++ A  G        G N+
Sbjct: 274 RSTINKGIQTQIEDLAERWSNEFRRSDIRNLAILVIDIPSNQVVAYCGNVHFDQKQGGNQ 333

Query: 467 --VLNASRQIGSLVKPAVYLTALAH----PDQYNLATTLEDKPLTLKGSEGSAWTPRNYD 520
             V+ A R  GS++KP +Y   L      PD       L D P+ + G     +TP+N+ 
Sbjct: 334 VDVIQAPRSTGSILKPFLYYAMLQEGSLLPDM-----LLPDVPVNING-----FTPQNFS 383

Query: 521 RQYRGEVPLYLALAQSLNVPTVALGMKLGIDQVSATLGKLG---VNRDEIRPVPSMLLGS 577
            Q+ G VP   ALA+SLN+P V +  + G+ +  + L ++G   +NR       S++LG 
Sbjct: 384 MQFEGAVPASEALARSLNIPAVTMLQRYGVPKFHSFLQQIGLKTINRSSSHYGLSLILGG 443

Query: 578 FSLTPYQVAQMYQTLTNSGKKAPLSALRSVLDLEGNVLYESLPRVSQAVD---QQAAWLT 634
              T + V   Y  +  S  + P  +   +L            R++++ D     A W T
Sbjct: 444 AEATLWDVTNAYAMMGRSLLQLPQRSCSLLLPTS---------RITESTDPFQPGAVWQT 494

Query: 635 TYAMKQGVQEGTGRYLNAQFSSAALAGKTGTTNDNRDSWFVGVDGREVTTIWLG 688
             A+K+ V         +  S   +A KTGT+   RD+W VGV  R    +W+G
Sbjct: 495 FDALKE-VNRPEEIDWKSIPSMQTIAWKTGTSYGFRDAWAVGVTPRYAVGVWVG 547