Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 839 a.a., 1A family penicillin-binding protein (RefSeq) from Shewanella sp. ANA-3

 Score =  164 bits (414), Expect = 2e-44
 Identities = 90/275 (32%), Positives = 157/275 (57%), Gaps = 5/275 (1%)

Query: 171 MLEKDSPEQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQ 230
           ++ +   ++R+ L+ ++ P+ L+ A L TED  FY+H G+ P+ + RA +V L  G   Q
Sbjct: 57  LISQFGEKRRIPLKLEEVPKPLLQAFLATEDARFYEHGGIDPVGVMRAAIVMLTTGEKKQ 116

Query: 231 GGSTLTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADA 290
           G ST+T Q+A+N FL+ D+T+ RK++E +++  I+   +KD ILE Y+N +YLGQ     
Sbjct: 117 GASTITMQVARNFFLTRDKTIIRKVKEIFISYHIEQLLTKDEILELYVNRIYLGQRA--- 173

Query: 291 IHGFGLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEH 350
            +G G A+++YFG+ +Q+L + +++++ G+ K PS  NP+    RA  RR++VL  M E 
Sbjct: 174 -YGVGAAAQVYFGKNVQDLTLSEMSMIAGLPKAPSTLNPITSPSRALARRNVVLMRMNEV 232

Query: 351 DILTAPEYQQAVTRPLDVQ-KTAQIASRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSL 409
             ++  EYQ AV  PL  +   A+I    P   +     + +K G++    +G  V+T++
Sbjct: 233 GYISKAEYQAAVQEPLIAKYHGAEIDLYAPYISEMARDYMVQKYGEEEAYTNGYNVYTTI 292

Query: 410 DPVSQSKLEQAIHDQIPQLAKTAGKDLEAAAIAVD 444
               Q   +QA+ + +    +  G    AA +  D
Sbjct: 293 SSEQQLLAQQALRNNVYAYDERHGYRGPAAVLWTD 327



 Score =  134 bits (338), Expect = 2e-35
 Identities = 99/322 (30%), Positives = 151/322 (46%), Gaps = 64/322 (19%)

Query: 424 QIPQLAKTAGKDLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPAVY 483
           Q+P++A        +A +A+D  +G IR +VGG       +NRV  A RQ+GS +KP +Y
Sbjct: 420 QVPEVA--------SATVALDPTNGAIRTLVGGYSFSQSQYNRVTQAKRQLGSNIKPFIY 471

Query: 484 LTALAHPDQYNLATTLEDKPLTLKG-SEGSAWTPRNYDRQYRGEVPLYLALAQSLNVPTV 542
             AL     + LAT + + P+     S+G+AW P+N    Y G   L + LAQS+NV +V
Sbjct: 472 AAALEKG--FTLATLINNAPINKPDISQGTAWRPKNSPDIYGGPTRLRVGLAQSINVMSV 529

Query: 543 ALGMKLGIDQVSATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGKKAPLS 602
                +G+D   A L K G + +++    S+ LGS S+TP QVA  +    N G      
Sbjct: 530 RAMRHIGLDAAIAELTKFGFDPNDLPRNESLALGSPSVTPLQVATAFNVFANGGFLVEPY 589

Query: 603 ALRSVLDLEGNVLYESLPRVS--------------------------------------- 623
            +  V D  GNV+ ++ P ++                                       
Sbjct: 590 YIERVEDSFGNVIEKANPTLACKPNNSFVQPSSDPMSFGEPTTQTDEPVAHCFEQTGRYA 649

Query: 624 -QAVDQQAAWLTTYAMKQGV------QEGTGRYLNAQFSSAAL------AGKTGTTNDNR 670
            Q + +Q A+L T A+K  +       +GTG +    + +A L      AGKTGTTN++R
Sbjct: 650 PQIISEQTAFLITEALKSVIWGGGDWSKGTG-WQGTAWRAAQLIKRHDIAGKTGTTNESR 708

Query: 671 DSWFVGVDGREVTTIWLGRDDN 692
           D+WF G      +T W+G DD+
Sbjct: 709 DTWFSGFGPTLTSTFWVGFDDH 730