Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 764 a.a., penicillin-binding protein 1B (RefSeq) from Shewanella sp. ANA-3

 Score =  664 bits (1714), Expect = 0.0
 Identities = 353/775 (45%), Positives = 493/775 (63%), Gaps = 15/775 (1%)

Query: 1   MTRKSSNRSRGRKARSGKSASSSKLQIWLGRIWSIGWKLALTLAAVLVFIGIYLDSMIKQ 60
           MT K++ +++ +++R              G+IWS+ WKLAL   AV+ F  IYLD +I +
Sbjct: 1   MTTKTTKKAKAKRSRG-----------LFGQIWSLTWKLALIGLAVVTFYSIYLDQIIAR 49

Query: 61  RFEGQLFDLPTVVYARILTLEPGNGLSLQELRNELDVLNYRKVAQPRFPGEYASSSSRIE 120
           +FEGQ + LP  V++R + L PG  +S  +L  EL +L YRKVA PR  GE+++SS++IE
Sbjct: 50  KFEGQKWHLPAQVFSRSMALYPGAAVSHPQLMAELKLLGYRKVANPREVGEFSASSTKIE 109

Query: 121 LIRRPFEFADGPEPDRRVMLTFDGSGLNKIESLEQKRELGYLRLEPKLMGMLEKDSPEQR 180
           L RRPF   +G + ++RVM++FD  G++ I  +  KR+L    LEP L+  +     E R
Sbjct: 110 LWRRPFLHPEGDQAEQRVMISFDSDGISSIARMSDKRQLAVFHLEPVLLDRIIAGDGEDR 169

Query: 181 LFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQGGSTLTQQLA 240
           LF+  ++ P+ +V ALL+ EDR FY+H GV+P AI RA  VN+ AGRTVQGGSTLTQQLA
Sbjct: 170 LFVPTEEMPKAIVKALLLVEDRSFYEHHGVNPFAILRAAFVNISAGRTVQGGSTLTQQLA 229

Query: 241 KNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADAIHGFGLASRL 300
           KN FLSS+R+L RK+REA MA+IID+RYSK+ ILEAYLNEVY+GQ  + A+HG GLAS+ 
Sbjct: 230 KNFFLSSERSLLRKIREALMAVIIDFRYSKEEILEAYLNEVYMGQDKSRAVHGMGLASQF 289

Query: 301 YFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEHDILTAPEYQQ 360
           YFG+P+ EL   Q A LV  +KGPSYYNP RY ER++ERRDLVL+L+ME   L+  +Y+ 
Sbjct: 290 YFGRPIGELTTAQQAFLVAAIKGPSYYNPWRYPERSQERRDLVLRLLMESGELSTAQYKV 349

Query: 361 AVTRPLDVQK-TAQIASRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSLDPVSQSKLEQ 419
           AV  PL ++     +  + PA++  V  EL E+ GD     SG++++T+LDP++Q   E 
Sbjct: 350 AVESPLGLRNPNKPVHQKLPAFYALVKQELNERYGDALLKQSGVKIYTTLDPMAQEAAEI 409

Query: 420 AIHDQIPQLAKTAGKDLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVK 479
           A+      L K   K L+   +  D+++G I AMVG K  G+DG+NR +   R IGSL+K
Sbjct: 410 AVTQTFKSLDK-GNKSLQIGMVVTDKYTGGIAAMVGDKTPGFDGYNRAVEIRRPIGSLIK 468

Query: 480 PAVYLTALAHPDQYNLATTLEDKPLTLKGSEGSAWTPRNYDRQYRGEVPLYLALAQSLNV 539
           P VY TALA   Q+ LA+ L+D+P+TLK  +G  W+P+N+D+++ G+V L  AL +S+NV
Sbjct: 469 PFVYATALAPNSQFTLASPLKDQPITLKNEQGKTWSPQNFDKKFSGQVSLLTALKKSMNV 528

Query: 540 PTVALGMKLGIDQVSATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGKKA 599
           PTV LG+ +G+D V+ TL K G  ++ +   PSMLLG+ + +P  VAQ+YQTL + G   
Sbjct: 529 PTVNLGIAVGVDAVATTLAKSGW-QEPLNEYPSMLLGAVNGSPLMVAQVYQTLADYGAYR 587

Query: 600 PLSALRSVLDLEGNVLYESLPRVSQAVDQQAAWLTTYAMKQGVQEGTGRYLNAQFSSAAL 659
            L+ + +VLD     L  +     QA+     +L  YAM+Q V+ GT   L   F   AL
Sbjct: 588 KLTTVTAVLDSHNQPLPVTRSPKEQAITPDTDFLVQYAMQQVVRSGTATRLGNAFPGVAL 647

Query: 660 AGKTGTTNDNRDSWFVGVDGREVTTIWLGRDDNQPTKLTGASGALRVYAQYLKYRIPEKL 719
           AGKTGT+ND+RDSWF G D R V  IW+GRDDN  T L G+SGA+ VY  +LK R P  L
Sbjct: 648 AGKTGTSNDSRDSWFAGFDERNVAAIWVGRDDNGKTSLYGSSGAMAVYQAFLKERPPIGL 707

Query: 720 QLPWPEGITTFGFAKQTQGGLKLDCDNAFKLPIWDNQQQLKQQCENRPTEWIKKL 774
           +   P G+    F + T    +  C N   LP         + C   P +W +K+
Sbjct: 708 RSIPPTGVIQGYFDRDTGEAKEAGCRNTEALPALRGTYNPAKNC-GEPLQWWQKI 761