Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 1303 a.a., ATP-dependent RNA helicase HrpA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N2E2

 Score =  263 bits (673), Expect = 4e-74
 Identities = 170/467 (36%), Positives = 251/467 (53%), Gaps = 23/467 (4%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG-GFHGKIIMLEPRRLAAR 62
           LPI     ++   +     LI+    G+GK+T  P   L+ G G HG I   +PRR+AAR
Sbjct: 72  LPIAAKRDEIKDALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLIGHTQPRRIAAR 131

Query: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122
           ++A  +A++L   +G  VGY+VR E++    T ++++T+GI+    QND  L+  D +I 
Sbjct: 132 SVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQNDRYLERYDTIIV 191

Query: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182
           DE HERS++ D  L   L+     R DLK+++ SAT+D +        A  VE  GR FP
Sbjct: 192 DEAHERSLNIDFLLGY-LKTLLPRRPDLKVIITSATIDLERFSKHFDDAPIVEVSGRTFP 250

Query: 183 IEIRYQPL-----------RSDEPLVTAMQRQIRHLLQHET------GSLLAFLPGAASI 225
           +E  Y+PL             D  +  A+   +  +  +E       G +L FLPG   I
Sbjct: 251 VETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDVLVFLPGEREI 310

Query: 226 NQLTEQLSDLA-SEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIR 284
               E L        EI PLY ++  A QQR I  +  GRR VVLATN+AETSLT+ GIR
Sbjct: 311 RDAAEMLRKAQLKHTEILPLYARLSPAEQQR-IFQSHPGRR-VVLATNVAETSLTVPGIR 368

Query: 285 IVLDSGLERSARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQP 344
            V+DSG  R +R+  +  + RL    I+Q+SA QR GR GR+EPGICVRLYSE     +P
Sbjct: 369 YVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYSEEDFLGRP 428

Query: 345 WVPEPEMLHTDLAPLALELAQWG-AQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQI 403
              +PE+L T+LA + L++      + +D  ++  P   A +    LLQ L  +D  +Q+
Sbjct: 429 EFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELSAVDRNSQL 488

Query: 404 TAAGKEAHLLGVEPRIAAMLLSADRLGESALQSALALTVLLEEPERQ 450
           T  G++   L V+PR+  MLL A +LG       +A  + +++P  +
Sbjct: 489 TPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRER 535



 Score = 32.0 bits (71), Expect = 2e-04
 Identities = 56/220 (25%), Positives = 79/220 (35%), Gaps = 36/220 (16%)

Query: 68   LAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIFD---- 123
            L Q LG E+ +  G RV  E     A Q+E       + +  N   +DG    + +    
Sbjct: 940  LPQALGRELLRMTGARVSDEAWAEAAQQVE-------SHLRMNLEIVDGQGKFLGEGRDL 992

Query: 124  -EFHERSIHA-DTALALALEVQSALREDLKIVVMSATLDQQALQNL-------LPQASYV 174
             E   R   A   ALA+    +S    + KI    A   QQ +  L       L +   V
Sbjct: 993  AELTARFAEASQAALAVPQTAKSQAPVEAKIFAPVAEKTQQKIAGLSMTVYPALVEEGGV 1052

Query: 175  ESQGR-GFPIEIRYQPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLS 233
              +GR   P E  +Q  R       A+QR +   L      L   LPG   +  L  +L 
Sbjct: 1053 VKEGRFPTPAEAEFQHRR-------ALQRLLMQQLAESAKFLRGKLPGLTELGLLYRELG 1105

Query: 234  DLASEVE--------ICPLYGQMEFAAQQRAIAPTAAGRR 265
             + S VE         C L G+        A+A  A  +R
Sbjct: 1106 RIDSLVEDILLASLDSCVLEGEASLPRDGAALASLAERKR 1145