Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 820 a.a., ATP-dependent helicase from Sinorhizobium meliloti 1021

 Score =  605 bits (1559), Expect = e-177
 Identities = 351/818 (42%), Positives = 504/818 (61%), Gaps = 14/818 (1%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLL-QAGGFHGKIIMLEPRRLAAR 62
           LPI E++P L   + ++  ++L A PGAGK+T  PL LL Q     GKII+LEPRRLAAR
Sbjct: 7   LPIREILPGLGDALASAGSVVLSAPPGAGKTTLVPLFLLDQPWRGDGKIILLEPRRLAAR 66

Query: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122
             A  +A+ LGE+VG+ VGYR+R +NRVS  T++E+VTEG+ +RM+ +DPEL GV  ++F
Sbjct: 67  AAAGRMAELLGEKVGETVGYRMRLDNRVSGKTRIEVVTEGVFSRMILDDPELSGVSAVLF 126

Query: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182
           DEFHERS+ AD  LALAL+VQSALREDL+IVVMSATLD + +  L+  A  ++S+GR FP
Sbjct: 127 DEFHERSLDADFGLALALDVQSALREDLRIVVMSATLDVERIAGLVGDAPVLKSEGRSFP 186

Query: 183 IEIRYQPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDLASE-VEI 241
           I+IRY+   + E +  AM R I    + E GS+LAFLPG A I +   +L+D   E   I
Sbjct: 187 IDIRYENRAAGESVEDAMVRTIAEAHRSEKGSILAFLPGQAEIARTAARLADRFGEATAI 246

Query: 242 CPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSARFDLKT 301
            PLYG +    Q  AI P   G RK+VLAT+IAETS+TI+G+RIV+DSGL+R   F+  T
Sbjct: 247 VPLYGNLSQKEQDAAIRPAPKGTRKIVLATSIAETSITIDGVRIVVDSGLQRLPVFEAST 306

Query: 302 GITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLAPLAL 361
           GITRLE VR++++SA+QRAGRAGR EPGI +RL+   Q         P++L +DL+ L L
Sbjct: 307 GITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHSGQTAALAAFTPPQILASDLSGLLL 366

Query: 362 ELAQWG-AQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEAHLLGVEPRIA 420
           +LA WG A PS L +L+ PP +   +A+ LL  LG +D+R  +T  G+    L +  R+A
Sbjct: 367 DLAHWGVADPSTLRFLDPPPETTLREARGLLLELGAIDSRGALTPRGRRIRDLALPVRLA 426

Query: 421 AMLLSADRLGESALQSALALTVLLEEP--ERQVIDVQHSLHRWQQGRHPKQKLLIQRAQS 478
           AM ++A   G +  Q A  L V+L E       ID++  L R++  R  + K     A+ 
Sbjct: 427 AMAVAAAEEGRA--QEACLLAVMLTEQGLGGNGIDIEERLRRFRSERSDRAKAARGLARR 484

Query: 479 LAHKLDTAFSLSSVDSAWLPLVACL-AFPDRIAQQRGQQTGQFLLANGHGAWLAVEDRLS 537
           +A +L    S ++     LP    + AFPDRIA QRG + G+F++ANG GA +   +RL+
Sbjct: 485 MAAELGA--SKNAGPKPVLPGALLMHAFPDRIALQRGGR-GRFVMANGRGAEIPETERLA 541

Query: 538 AADYLVALDLMRGQTQASQIFSALELDIHALERVLPALISRVEQVDWDEKAGRLSAEAQW 597
           AA  LV  DL  G+  A ++ +A E+D   +E  +P  I   EQ  +D  + ++ A    
Sbjct: 542 AAGMLVIADL-TGRAGAQRVLAAAEIDRSDVEGHMPEAIVTEEQSFFDRASRQVRARRVT 600

Query: 598 RIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASEWLARARCAAEWLPEEA 657
           R+  ++   + LP P  +   +AL   +R+ GL  + + +D  +   R       +  E 
Sbjct: 601 RLGAIIFEEKPLPRPSGEAAARALADGIRQLGLAAVPFPKDVEQLRDRIGFLHRSI-GEP 659

Query: 658 WPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWELSQQLDEWLPTHHL 717
           WP + D  L++RL+ W  P+  G   + G++   + + L   + +EL + L    PTH  
Sbjct: 660 WPDMSDTGLISRLDEWFVPFQGGAGGIDGIKGRDLAEGLMSLVPYELQRDLARLAPTHFE 719

Query: 718 LPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMELLSPAQRPLQVTRDL 777
            PTG    I Y  G EP LS+R+QE+FG ++ P +  G   +++EL+SP  RP+Q TRDL
Sbjct: 720 APTGQRHPIHYD-GDEPLLSIRVQELFGLKTHPAIGDGRLPLLLELISPGHRPIQTTRDL 778

Query: 778 ASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTK 815
             FWAG++K+V+ EM+GRYPKH WP+DPAN + T++ K
Sbjct: 779 PGFWAGSWKDVRAEMRGRYPKHPWPEDPANAMPTTRAK 816