Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 838 a.a., ATP-dependent helicase HrpB (RefSeq) from Shewanella amazonensis SB2B

 Score =  612 bits (1579), Expect = e-179
 Identities = 362/837 (43%), Positives = 508/837 (60%), Gaps = 26/837 (3%)

Query: 1   MSPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGKIIMLEPRRLA 60
           ++ LP+ ++  +L   +    QLIL+A  GAGKST  PL LL      G+IIMLEPRR+A
Sbjct: 3   LNALPVCDLFDELKRSLAQHQQLILEAPTGAGKSTALPLALLDWPEISGRIIMLEPRRVA 62

Query: 61  ARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVL 120
           AR++AR++A+Q G ++G  VGYRVRG+++VS+ T+LE+VTEGI+TRM+Q+DPELDGV ++
Sbjct: 63  ARSVARFIAKQRGCQLGAEVGYRVRGDSKVSKETRLEVVTEGILTRMIQDDPELDGVGLI 122

Query: 121 IFDEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRG 180
           IFDE HER +  D  LALALEVQ+ LR+DL I+ MSATL    L+ L+P A  + S+GR 
Sbjct: 123 IFDEIHERHLSTDLGLALALEVQAGLRDDLNILAMSATLSGMPLEALMPDAVLLRSEGRS 182

Query: 181 FPIEIRYQPLRSDEPLVTAMQRQIRHLLQHE--------TGSLLAFLPGAASINQLTEQL 232
           FP+ + Y  + +       M + +  L   +         G++LAFLPG A I +L + L
Sbjct: 183 FPVAVEYASVPAGADWQAHMGKTLMELATGKRPLPEGITPGTVLAFLPGKAEIERLKDYL 242

Query: 233 SDLASEVE--ICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSG 290
           ++  SE E  ICPLYG+++   Q RA++    GRRK+VLATN+AE+SLTI+G+ +V+D G
Sbjct: 243 AERLSESEFAICPLYGELDANTQDRALSADPDGRRKLVLATNVAESSLTIDGVTLVVDCG 302

Query: 291 LERSARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPE 350
             R A F+ +TG+TRL   RI+Q+SA QRAGRAGRL PG+C+RL+S+ + ++Q    EPE
Sbjct: 303 FVRQASFNPRTGVTRLGLKRISQASAIQRAGRAGRLAPGLCIRLWSQDEFERQVKADEPE 362

Query: 351 MLHTDLAPLALELAQWGAQP-SDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKE 409
           +L ++L  LA E A WGA+  + L  L+ PP    + A  LL+ L L+D   ++TA G++
Sbjct: 363 ILRSELVSLAQEAAVWGARDFAALKLLSRPPKVNESLAWALLKDLELVDDNHKLTALGRD 422

Query: 410 AHLLGVEPRIAAMLLSADRLGESALQSALA-----LTVLLEEP--ERQVIDVQHSLHRWQ 462
           AH LG  PR+  MLL A  LGE+   + LA     L  +LE     R+  D+ H L    
Sbjct: 423 AHRLGCHPRLGHMLLKARALGEAQSDATLAPLACLLAAILEGRGLPRRGCDISHYLGWAT 482

Query: 463 QGRHPKQKLLIQRAQSLAHKLDTAFSLSSVDSAWLPLVACLAFPDRIAQQRGQQTGQFLL 522
            G+  +Q    Q A  L  K D A    +       L+  LA+PDRIA  RG+    F+L
Sbjct: 483 SGQTGQQAK--QWAAKLGIKADFAAVAKAAHPRDCGLLLALAYPDRIAMARGKD--GFVL 538

Query: 523 ANGHGAWLAVEDRLSAADYLVALDL--MRGQTQASQIFSALELDIHALERVLPALISRVE 580
           ANG G  +   D ++    LVA D   + G++ A +++    LD    +  L  L S  E
Sbjct: 539 ANGTGITVDESDAMALEPMLVAADFGELEGRS-AGRLWLGAMLDARLFDGPLAFLQSERE 597

Query: 581 QVDWDEKAGRLSAEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDAS 640
              +DE  GR  AE Q  +  LVL RE + +        A ++ +R+KGL  L   +DA 
Sbjct: 598 VSGFDEGRGRFVAEKQRVVGSLVLGRETVSQVPAALKASAWIARIRQKGLACLGLDDDAM 657

Query: 641 EWLARARCAAEWLPEEAWPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYL 700
           +   R   AA  L  + WPA+DDE LL  LE WL PYL  + S+     +   + L+  L
Sbjct: 658 QLRRRVSLAANLLGGD-WPAMDDEALLDGLEDWLGPYLGNINSLNEFNKLDAGRLLRDSL 716

Query: 701 GWELSQQLDEWLPTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVV 760
            W+L + LDE LPTH+ + TG    IRY+      L VR+QE +G  ++P +A G   + 
Sbjct: 717 DWQLRRTLDEALPTHYPMATGTQAPIRYEDDGRAMLRVRLQEAYGMAATPLLAGGRLKLT 776

Query: 761 MELLSPAQRPLQVTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTKRQ 817
           MELLSPAQRPL +T DLASFW G Y++V+KEM+GRYPKH+WPDDPAN + T  TK++
Sbjct: 777 MELLSPAQRPLALTADLASFWQGPYQDVKKEMRGRYPKHLWPDDPANTLPTKFTKKK 833