Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 1289 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella amazonensis SB2B

 Score =  244 bits (622), Expect = 3e-68
 Identities = 162/472 (34%), Positives = 252/472 (53%), Gaps = 23/472 (4%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG-GFHGKIIMLEPRRLAAR 62
           LP+ +    +   I     +I+    G+GK+T  P   L+ G G  G I   +PRRLAAR
Sbjct: 74  LPVSQKRDDIAEAIAKHQVVIVAGETGSGKTTQLPKICLELGRGSRGLIGHTQPRRLAAR 133

Query: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122
           ++A  +A +L   +G+ VG++VR  + ++  + ++++T+GI+   L +D  L+  D LI 
Sbjct: 134 SVATRVADELQSPLGEAVGFKVRFADAINENSYIKLMTDGILLAELSSDKYLNQYDTLII 193

Query: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182
           DE HERS++ D  L    ++    R DLK+++ SAT+D         +A  +E  GR +P
Sbjct: 194 DEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDVDRFSTHFDKAPVIEVSGRTYP 252

Query: 183 IEIRYQPL-RSDEP---LVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDLA-S 237
           +E RY+PL + DEP   L+  +   +  L+    G +L F+ G   I    EQLS     
Sbjct: 253 VETRYRPLVKDDEPDLDLMDGIFEAVDELMAEGPGDILIFMNGEREIRDTAEQLSRRQYR 312

Query: 238 EVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSARF 297
           + E+ PLY ++ +  Q + +  +  GRR +VLATN+AETSLT+ GIR V+D G  R +R+
Sbjct: 313 DTEVLPLYARLSYGEQSK-VFKSHTGRR-IVLATNVAETSLTVPGIRYVIDPGTARISRY 370

Query: 298 DLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLA 357
             +T + RL    I+Q+SA QR GR GR+ PGIC+RLY E     +P   +PE+L T+LA
Sbjct: 371 SYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYEETDFLSRPEFTDPEILRTNLA 430

Query: 358 PLALELAQWGAQPSDLAWLNLPPSSAFAQAQQL----LQRLGLLDARTQITAAGKEAHLL 413
            + L++   G           PP     +   L    LQ + L     Q+T  G++   +
Sbjct: 431 SVILQMLAIGLGDIKGFPFIQPPDERHIKDGFLLLEELQAIKLKKGLPQMTPLGRKLAHV 490

Query: 414 GVEPRIAAMLLSADRLGESALQSALALTVLL------EEP--ERQVIDVQHS 457
            ++PR+A M++ A   G  AL  AL +T  L      E P  ++Q  D  HS
Sbjct: 491 PLDPRLARMVIEAADRG--ALHEALVVTSALSIQDPRERPLEKKQAADEAHS 540