Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 834 a.a., ATP-dependent RNA helicase HrpB from Phaeobacter inhibens DSM 17395

 Score =  511 bits (1317), Expect = e-149
 Identities = 333/847 (39%), Positives = 476/847 (56%), Gaps = 48/847 (5%)

Query: 1   MSPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGKIIMLEPRRLA 60
           M+ LPI + +P+L++ +    + +L+A PGAGK+T  PL +L+AG   G+I+MLEPRRLA
Sbjct: 1   MTRLPIDDALPELIAALQRQKRAVLQAPPGAGKTTRVPLAMLEAGLCAGRILMLEPRRLA 60

Query: 61  ARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVL 120
           AR  A  +A  LGE VGQ VGYR+RGE +VS  T++E+VTEGI+TR+LQ+DP+L GV  +
Sbjct: 61  ARAAAERMADTLGEPVGQTVGYRIRGEAKVSAETRIEVVTEGILTRILQSDPDLPGVGAV 120

Query: 121 IFDEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRG 180
           IFDEFHERS+ AD  LAL LEV  ALR+DL ++ MSATLD   +  L+ +A  V S+GR 
Sbjct: 121 IFDEFHERSLSADFGLALCLEVAGALRDDLILLAMSATLDAAPVAELM-EAPLVTSEGRS 179

Query: 181 FPIEIRY--QPLRSDE-------------PLVTAMQRQIRHL-------LQHETGSLLAF 218
           +P+E R+   PL +D               LV   + + R          + + G +L F
Sbjct: 180 YPVETRWLDTPLPADSRSGRGPRRLDALVDLVLRAEAESRPAGSGGRGGSEAKGGGILVF 239

Query: 219 LPGAASINQLTEQLSD-LASEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETS 277
           LPG   I +    L+  L  +  + PL+G + FA Q+ AI P     RK+VLAT+IAETS
Sbjct: 240 LPGEGEIRKAAAALAGRLPGDCVVRPLFGALPFAEQRAAIQPDPVA-RKIVLATSIAETS 298

Query: 278 LTIEGIRIVLDSGLERSARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSE 337
           LTI+ IR+V+D GL R +RFD  +G++RL   R+ ++ A QR GRAGR+  G+  RL+++
Sbjct: 299 LTIQDIRVVVDMGLARRSRFDPGSGMSRLVTERVTRAEATQRQGRAGRMAAGVGYRLWTK 358

Query: 338 AQLKQQPWVPEPEMLHTDLAPLALELAQWGAQPSDLAWLNLPPSSAFAQAQQLLQRLGLL 397
            +       P PE+   DL  LALELA WGA P DL +L  PP  A  +AQ LL+ LG L
Sbjct: 359 GEDGALAAFPPPEIQAADLTSLALELALWGAGPDDLPFLTPPPEGALKEAQALLRMLGAL 418

Query: 398 DARTQITAAGKEAHLLGVEPRIAAMLLSADRLGESALQSALALTVLLEEPERQV------ 451
           D   +IT+ GK    L + PR+  ML    R G  A  + LA  +   +P R        
Sbjct: 419 DGEGRITSHGKVLAKLPLHPRLGHMLA---RFGADA--APLAALLAERDPLRGAPVDLAL 473

Query: 452 -IDVQHSLHRWQQGRHPKQKL-LIQRAQSLAHKLD-TAFSLSSVDSAWLPLVACLAFPDR 508
            ++       +Q+ R  +  +  ++R +  A +L   A S +S  SA   ++A  A+PDR
Sbjct: 474 RLEALRDAKAFQRRRSYQLNIPTLERIKGEAKRLTRQARSGASSASASAAVMAAAAYPDR 533

Query: 509 IAQQRGQQTGQFLLANGHGAWLAVEDRLSAADYLVALDLMRGQTQASQIFSALELDIHAL 568
           I Q+R     +++L+ G GA L  ED L+A  +LV LD   G  + +++  A  + +  L
Sbjct: 534 IGQRRKGDAPRYVLSGGKGAVLPPEDSLAATPFLVGLD-SDGNPREARLRLAAPITLSEL 592

Query: 569 ERVLPALISRVEQVDWDEKAGRLSAEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRK 628
                  I       W ++  R+ A  Q  +  +VL      +     +  A+L  VR  
Sbjct: 593 RSAFADQIKPQLTCVWSKRDRRVVARRQQCLGAIVLEDHIWKDVPADAIATAMLEGVREL 652

Query: 629 GLTVLQWSEDASEWLARARCAAEWLPEEAWPALDDETLLARLELWLEPYLAGVTSVKGLQ 688
           GL +   S  A+ ++AR R        E  P   +E LLA LE WL P L GV S +  +
Sbjct: 653 GLRL---SGAAARFVARVRLLQ--ADGEDLPDFSEEALLATLEDWLLPMLDGVRSAEDWK 707

Query: 689 SVSVLQALKHYLGWELSQQLDEWLPTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQS 748
              +L AL+  L WE +Q+LD+  P H   P G    I Y   + P +SVR+QE+FG   
Sbjct: 708 RFDLLPALRTALSWEQTQRLDQMAPPHFTTPLGRKVPIDYAEEV-PEISVRLQEMFGVTR 766

Query: 749 SPRVAKGTRAVVMELLSPAQRPLQVTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANH 808
            P V  G  A+ + LLSPAQRP+Q+TRDL  FW+G+Y +V+K+M+ +YPKH WP+DP   
Sbjct: 767 HPTV--GGVALKVSLLSPAQRPIQITRDLPGFWSGSYADVRKDMRAQYPKHPWPEDPTQA 824

Query: 809 VATSKTK 815
             T + K
Sbjct: 825 DPTLRAK 831