Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 843 a.a., ATP-dependent helicase HrpB (RefSeq) from Shewanella loihica PV-4

 Score =  600 bits (1546), Expect = e-175
 Identities = 356/828 (42%), Positives = 493/828 (59%), Gaps = 13/828 (1%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGKIIMLEPRRLAARN 63
           +PI  ++P++   + ++ QLIL+A  GAGKST  PL +L      GKI+MLEPRR+AAR+
Sbjct: 15  VPIQTLLPEIQRTLADNAQLILQAPTGAGKSTALPLAMLDWPEIEGKILMLEPRRIAARS 74

Query: 64  IARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIFD 123
           +A ++A + GE VGQ VG+RVRGE+ VS  T+LE+VTEG++TRM+Q DPEL G  ++IFD
Sbjct: 75  VAHFIAARRGEPVGQSVGFRVRGESSVSAKTRLEVVTEGVLTRMIQQDPELSGYGLIIFD 134

Query: 124 EFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFPI 183
           E HER +  D  LALALEVQ++ REDLKI+ MSATLD   LQ L+P A+ + S+GR FP+
Sbjct: 135 EIHERHLTTDLGLALALEVQASFREDLKILAMSATLDGLPLQALMPDAASLVSEGRSFPV 194

Query: 184 EIRYQPLRSDEPLVTAMQRQI-RHLLQHETGSLLAFLPGAASINQLTEQLSDLASEVE-- 240
            + Y+P  + +  +  M + I   + +H+ GSLLAFLPG   I +L   LS+     +  
Sbjct: 195 SLSYRPSPAHQDWLLHMAKVIVEAVAEHQEGSLLAFLPGQREIARLQMLLSERLDPKQFL 254

Query: 241 ICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSARFDLK 300
           I PLYG +  + Q  AIAP   G RK+VL+TN+AE+SLTI+ IR+V+D+G +R A F+ K
Sbjct: 255 ITPLYGALPPSQQDSAIAPPPPGMRKLVLSTNVAESSLTIQDIRLVVDAGYKRQASFNPK 314

Query: 301 TGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLAPLA 360
           T ++RL   RI+QSSA QR+GRAGRL  G C+RL+ + + ++     EPE+LH DL    
Sbjct: 315 TAVSRLSLKRISQSSAAQRSGRAGRLSEGHCIRLWPQQEHERLLKADEPEILHGDLTNAV 374

Query: 361 LELAQWGAQPSDLAWLNLPPSSAFAQ-AQQLLQRLGLLDARTQITAAGKEAHLLGVEPRI 419
           L+ A WG    D   L  PPS A    A  LLQ L L+D+  +ITA G+ A+ LG  PR+
Sbjct: 375 LDAAFWGVNTLDALPLISPPSEANETVASDLLQALALVDSDRRITAHGRAAYRLGCHPRL 434

Query: 420 AAMLLSADRL-GESA---LQSALALTVLLEEPE--RQVIDVQHSLHRWQQGRHPKQKLLI 473
           A MLL+A  L G  A   L  A  L  LLE     R+  D+   L+  + G   K     
Sbjct: 435 AHMLLAAKELDGIDAPYYLPLAAVLAALLESRALARRGADISRYLNDARGGEVAKLAQQY 494

Query: 474 QRAQSLAHKLDTAFSLSSVDSAWLPLVACLAFPDRIAQQRGQQTGQFLLANGHGAWLAVE 533
               + A     A ++       +  +  LAFPDRIA+ RG +  Q  LA G G  L  +
Sbjct: 495 LARMNAARGNQIAKAIGESRDQDIATLLALAFPDRIAKARGAKGYQ--LACGAGVALNDD 552

Query: 534 DRLSAADYLVALDLMRGQTQAS-QIFSALELDIHALERVLPALISRVEQVDWDEKAGRLS 592
           D L    +LV  D    + Q+S +I  A +LD    +  L + +  V +  WDE+  R  
Sbjct: 553 DALQGEPWLVVADFQESEGQSSGRILLAAKLDAALFDGPLASQVKSVVETGWDEEKARFY 612

Query: 593 AEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASEWLARARCAAEW 652
              Q RI  ++L    L   D++ + QA+   +R KGL++L + +   +   R   A++ 
Sbjct: 613 GLTQRRIGAIILGERPLATLDEETIKQAIYQLIRTKGLSLLGFDDKVEQLRLRVALASKL 672

Query: 653 LPEEAWPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWELSQQLDEWL 712
                WP L D+ LLA L  WL PYL GV  +  L+ +     L + + W   Q L+E L
Sbjct: 673 ALAGDWPDLSDQALLATLPEWLGPYLDGVRRLNQLKGLDFYTLLHNQMEWGQQQILNEAL 732

Query: 713 PTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMELLSPAQRPLQ 772
           P+H  + TG    IRY++     LSVR+QE  G   SPR+A+G   V MELLSPA RPL 
Sbjct: 733 PSHWPMKTGTRAAIRYEMSGRALLSVRLQEALGMAESPRLAQGQLVVTMELLSPAMRPLA 792

Query: 773 VTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTKRQLNA 820
           +T DLA+FWAG Y EV+KEMKGRYPKH+WPDDPAN + T  TK++++A
Sbjct: 793 LTADLANFWAGPYVEVKKEMKGRYPKHLWPDDPANTLPTKLTKKKMSA 840