Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 1295 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella loihica PV-4

 Score =  251 bits (640), Expect = 2e-70
 Identities = 154/462 (33%), Positives = 253/462 (54%), Gaps = 17/462 (3%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG-GFHGKIIMLEPRRLAAR 62
           LP+ +   ++   I N+  +I+    G+GK+T  P   L+ G G  G I   +PRRLAAR
Sbjct: 74  LPVSQKRGEIAEAIANNQVVIVAGETGSGKTTQLPKICLELGLGTRGLIGHTQPRRLAAR 133

Query: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122
           ++A  +A++L   +G+ VG++VR  + +   + ++++T+GI+   L +D  LD  D +I 
Sbjct: 134 SVATRVAEELNSPLGEVVGFKVRFADAIKPTSYIKLMTDGILLAELSSDKYLDQYDTIII 193

Query: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182
           DE HERS++ D  L     V    R DLK+++ SAT+D +        A  +E  GR +P
Sbjct: 194 DEAHERSLNIDFILGYLKSVLKR-RPDLKVIITSATIDVERFSKHFNNAPVIEVSGRTYP 252

Query: 183 IEIRYQPLRSDEP----LVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDLA-S 237
           +E RY+PL  ++     L   +   +  L+    G +L FL G   I  L +QL+     
Sbjct: 253 VETRYRPLVGEQDEDLDLTDGIFAAVEELMAEGPGDILIFLNGEREIRDLADQLNKQQYR 312

Query: 238 EVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSARF 297
           + E+ PLY ++ +  Q + +  +  GRR +VLATN+AETSLT+ GI+ V+D G  R +R+
Sbjct: 313 DTEVLPLYARLSYGEQSK-VFKSHRGRR-IVLATNVAETSLTVPGIKYVIDPGTARISRY 370

Query: 298 DLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLA 357
             +T + RL    I+Q+SA QR GR GR+ PGIC+RLY EA    +P   +PE+L T+LA
Sbjct: 371 SYRTKVQRLPIEPISQASANQRQGRCGRVAPGICIRLYDEADFNNRPEFTDPEILRTNLA 430

Query: 358 PLALELAQWGAQPSDLAWLNLPPSSAFAQAQQL----LQRLGLLDARTQITAAGKEAHLL 413
            + L++   G    +      PP + + +   L    LQ +     + Q+T  G++   +
Sbjct: 431 SVILQMLSIGLGDIEGFPFIQPPDARYIRDGFLLLEELQSVRKHKGQLQLTPLGRQLASI 490

Query: 414 GVEPRIAAMLLSADRLGESALQSALALT--VLLEEPERQVID 453
            V+PR+A M++ A   G   L   L +T  + +++P  + +D
Sbjct: 491 PVDPRLARMVVQAKEYG--CLHETLVITAGLSIQDPRERPMD 530