Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 917 a.a., ATP-dependent helicase HrpB (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  547 bits (1410), Expect = e-160
 Identities = 357/897 (39%), Positives = 485/897 (54%), Gaps = 84/897 (9%)

Query: 1   MSPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHG-KIIMLEPRRL 59
           M  LP+  ++P+LL  + +  + +L+A PGAGK+T  PL LL A    G K+++LEPRRL
Sbjct: 1   MPRLPVDAILPRLLGVLVDGARAVLQAPPGAGKTTRVPLALLAAPWLAGRKVVLLEPRRL 60

Query: 60  AARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDV 119
           AAR  AR +A  LGE VG  VGYR+R + RV   T++E+VTEG++TRMLQ DPEL  V  
Sbjct: 61  AARAAARRMAATLGEAVGDTVGYRMRLDTRVGPRTRVEVVTEGVLTRMLQADPELADVGC 120

Query: 120 LIFDEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGR 179
           +IFDEFHERS+HAD  LAL L+ Q  LR DL++VVMSATLD   +  LL     +ES GR
Sbjct: 121 VIFDEFHERSLHADLGLALCLDCQEGLRPDLRLVVMSATLDCGPVVALLGGCPVIESAGR 180

Query: 180 GFPIEIRY-QPLRSDEPLVT--------AMQRQIRHLLQHETGSLLAFLPGAASINQLTE 230
            FP++ R+  P+R+  P  T        A+   +R  L    GSLL FLPGA  I +  E
Sbjct: 181 AFPVDTRHLPPVRNWLPYETTPPGVLEDAVADAVRRALHETPGSLLVFLPGAGEIRRTAE 240

Query: 231 QLSDLAS----EVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIV 286
           +L+ L++     V +  LYG +    Q  AIAP   G RKVVLAT IAETSLTI+G+R+V
Sbjct: 241 RLAGLSATPHGPVAVHALYGDLAPELQDAAIAPAPPGTRKVVLATAIAETSLTIDGVRVV 300

Query: 287 LDSGLERSARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWV 346
           +D+GL R  RFD ++G++RL   R++ + A+QR GRAGR EPG C RL+ E +       
Sbjct: 301 IDAGLARVPRFDPRSGMSRLVTERVSLAGADQRRGRAGRTEPGTCWRLWREGEEAALRPF 360

Query: 347 PEPEMLHTDLAPLALELAQWGA-QPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITA 405
             PE+L  DLAPL LELA WG    S L WL+ PP +  AQA++LL  LG LD   +IT 
Sbjct: 361 ARPEILDADLAPLLLELALWGVPDASALRWLDEPPQANLAQARELLILLGALDGAGRITP 420

Query: 406 AGKEAHLLGVEPRIAAMLLSADRLGESALQSALALTVLLEEPE-----------RQVIDV 454
            G+   +L + PR+A M++ A+ LG  A  +A  +  LLEE +           R  +  
Sbjct: 421 HGRRVAVLPLHPRLAHMVVRAEELGLGA--TACCVAALLEERDPLRDAGADLRLRVALLA 478

Query: 455 QHSLHRWQQGRHPKQKLLIQRAQSLAH-----------KLDTAFSLSSVDSAWLPLVACL 503
                    G  P    L + A+ +A            K   A   +  D      V  L
Sbjct: 479 GDGRRTGNAGGGPMVVRLREAARQVARLAGVDIDAAAGKGKGAHPGTRPDPEATGEVLAL 538

Query: 504 AFPDRIAQQRGQQTGQFLLANGHGAWLAVEDRLSAADYLVALDLMRGQTQASQIFSALEL 563
           A+PDR+A+ RGQ  GQF LA G GA+L  ED LS   +L   D M G     +I     L
Sbjct: 539 AYPDRVAEGRGQ--GQFRLACGRGAYLPPEDPLSREAFLAVGD-MDGDAARGRIRRCAPL 595

Query: 564 DIHALERVLPALISRVEQVDWDEKAGRLSAEAQWRIDQLVLRREKLPEPDKQKMTQALLS 623
               +E    A I+    V WD +   ++A  Q R+  LVL        D +++T A+++
Sbjct: 596 AREHIEEAFGASIAEGAFVVWDARTEAVAARRQRRLGALVLDDAPHDAADPEEVTAAVVA 655

Query: 624 YVRRKGLTVLQWSEDASEWLAR----------------------------ARCAAEWL-- 653
            +R  GL  L W+ +  +W AR                            + C  E    
Sbjct: 656 GIRSIGLHCLPWTPELEQWRARVALLRGLDAGGTGRAAEGSQPMPPRPDKSACPVESACR 715

Query: 654 -----PEEA-------WPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLG 701
                P+E+       WP + +  LLA LE WL PYL+G+T       + +  AL   L 
Sbjct: 716 VESAGPDESACQGDSIWPDVSEGALLAGLEHWLAPYLSGITRRAQFARIDLAGALAALLP 775

Query: 702 WELSQQLDEWLPTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVM 761
           WEL+++LD   P    +P+G+   + Y     P L+V++QE+FG   +PRVA G   +V+
Sbjct: 776 WELTRRLDAEAPERIEVPSGSQVLVDYAAEGGPVLAVKLQEMFGAGETPRVAGGRVPLVV 835

Query: 762 ELLSPAQRPLQVTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTKRQL 818
            LLSPA RPLQVTRDLA FW   Y  V+ EM+GRYPKH WP+DP     T  T R++
Sbjct: 836 HLLSPAGRPLQVTRDLAGFWRTGYPAVRAEMRGRYPKHPWPEDPLAAPPTRLTTRRM 892