Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 1293 a.a., ATP-dependent helicase HrpA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  240 bits (613), Expect = 3e-67
 Identities = 150/462 (32%), Positives = 249/462 (53%), Gaps = 17/462 (3%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG-GFHGKIIMLEPRRLAAR 62
           LP+  +   +   I+ +  +I+    G+GK+T  P   L+ G G  G I   +PRRLAAR
Sbjct: 76  LPVSGMREDIAKAISANQVVIIAGETGSGKTTQLPKICLELGLGSRGFIGHTQPRRLAAR 135

Query: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122
           ++A  +A++L   +G+ VG++VR  + +   + ++++T+GI+   L +D  LD  D +I 
Sbjct: 136 SVASRVAEELQSPLGEVVGFKVRFADALKSESYIKLMTDGILLAELTSDRYLDQYDTIII 195

Query: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182
           DE HERS++ D  L    ++    R DLKI++ SAT+D +        A  +E  GR +P
Sbjct: 196 DEAHERSLNIDFILGYLKQILKK-RPDLKIIITSATIDVERFSKHFNNAPIIEVSGRTYP 254

Query: 183 IEIRYQPL----RSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDLA-S 237
           +E RY+PL     +D   +  +   +  L+    G +L F+ G   I    EQL+     
Sbjct: 255 VETRYRPLVQDTEADLDQIEGIFAAVDELVAEGLGDILIFMNGEREIRDTAEQLNRRNYR 314

Query: 238 EVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSARF 297
           + EI PLY ++ +  Q +  +      R++VLATN+AETSLT+ GIR V+D G  R +R+
Sbjct: 315 DTEILPLYARLSYGEQSKVFSSHTG--RRIVLATNVAETSLTVPGIRYVIDPGTARISRY 372

Query: 298 DLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLA 357
             +T + RL    I+Q+SA QR GR GR+ PGIC+RLY EA    +P   +PE+L T+LA
Sbjct: 373 SYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNNRPAFTDPEILRTNLA 432

Query: 358 PLALELAQWGAQPSDLA---WLNLPPSSAFAQAQQLLQRLGLL---DARTQITAAGKEAH 411
            + L++   G    D+A   ++  P          LL+ L  +        +T  G++  
Sbjct: 433 SVILQMLAIGL--GDIAAFPFIEPPDPRHIRDGFLLLEELQAVKQQKGNIVLTPLGRQLS 490

Query: 412 LLGVEPRIAAMLLSADRLGESALQSALALTVLLEEPERQVID 453
            + V+PR+A M++ + +LG       +A  + +++P  + +D
Sbjct: 491 QIPVDPRLARMVIESHQLGCLNEVLVIASGLSIQDPRERPMD 532