Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 835 a.a., ATP-dependent helicase HrpB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  641 bits (1653), Expect = 0.0
 Identities = 368/830 (44%), Positives = 505/830 (60%), Gaps = 15/830 (1%)

Query: 1   MSPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGKIIMLEPRRLA 60
           M+ LPI  ++P L        Q+IL+A  GAGKST  PL +L      G+I+MLEPRR+A
Sbjct: 1   MNNLPIHSLLPSLRDAFATHAQVILEAPTGAGKSTALPLAMLDWAEISGRILMLEPRRVA 60

Query: 61  ARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVL 120
           AR++A+++A    + VGQ VG+RVRGE +VSR T+LEIVTEGI+TRM+Q DPEL G+D++
Sbjct: 61  ARSVAQFIASCRQQAVGQEVGFRVRGEAKVSRDTRLEIVTEGILTRMIQQDPELTGIDMI 120

Query: 121 IFDEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRG 180
           IFDE HER +  D  LALALEVQS+LR+DLKI+ MSATL   AL  L+P A+ ++S+GR 
Sbjct: 121 IFDEIHERHLTTDLGLALALEVQSSLRDDLKILAMSATLSGLALSELMPYAALLKSEGRT 180

Query: 181 FPIEIRYQPLRSDEPLVTAMQRQIRHLLQHETGS----LLAFLPGAASINQLTEQLSDL- 235
           FP+EI Y+ +   +  +  + R +       T S    +L FLPG A I ++ + L++  
Sbjct: 181 FPVEIIYRAVAGQQHWLDHLSRTVLDSAASITDSGPQDILVFLPGKAEILRVAQYLAERL 240

Query: 236 -ASEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERS 294
             S V ICPLYG++    Q RAI   A+GRRK+VL+TN+AE+SLTIEGI +V+DSG +R 
Sbjct: 241 DGSRVAICPLYGELSAQEQDRAIKADASGRRKIVLSTNVAESSLTIEGIGLVIDSGYKRQ 300

Query: 295 ARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHT 354
           A F+ KTG+TRL   RI+Q+SA QRAGRAGRL  G+C+RL+ + + ++     EPE+   
Sbjct: 301 ASFNPKTGVTRLSLKRISQASATQRAGRAGRLAAGVCIRLWGQEEHQRLLKADEPEISQA 360

Query: 355 DLAPLALELAQWGAQP-SDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEAHLL 413
           DL  +A + A WGA+  SDL  L  PPS   A A QLL+RL ++D + ++TA GK A+ L
Sbjct: 361 DLVSMAHDCAYWGAKSFSDLLLLTAPPSVNEALAWQLLRRLDVVDGQNKLTAHGKAAYEL 420

Query: 414 GVEPRIAAMLLSADRLGESALQSALALTVLLEEP--ERQVIDVQHSLHRWQQGRHPKQKL 471
           G  PR+A MLL+A          A  L  +LE     R+  D+ + LH   QG   +Q  
Sbjct: 421 GCHPRLAHMLLAAKSHSTELAALACLLAGILEARGLPRKGADIMNYLHFATQGSAGQQAK 480

Query: 472 LIQRAQSLAHKL---DTAFSLSSVDSAWLPLVACLAFPDRIAQQRGQQTGQFLLANGHGA 528
              R  +L  K    D     S      + L+  LA+PDRIA+ RG +  Q  LANG G 
Sbjct: 481 QWLRKLALDSKFTQADLGAIASHAHHRDVGLLLALAYPDRIAKSRGVEGYQ--LANGTGV 538

Query: 529 WLAVEDRLSAADYLVALDLMRGQTQ-ASQIFSALELDIHALERVLPALISRVEQVDWDEK 587
            L+ ED L+   +LV  D    + + A +++ A  L     +  L  L+   EQ  WDE 
Sbjct: 539 VLSAEDALAQTPWLVVADFQETEGKTAGRVYLACPLQPSLFDHELADLVDTHEQCGWDET 598

Query: 588 AGRLSAEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASEWLARAR 647
            GR  AE Q ++ Q++L+ E +  P++ ++  AL++Y+R++GL +L W+ +  ++ AR  
Sbjct: 599 KGRAVAERQAKVGQILLKSETIANPNRAQIVAALVNYIRQQGLQILNWNANLEQFQARLH 658

Query: 648 CAAEWLPEEAWPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWELSQQ 707
            A    P   WP + D  LLA LE WL PYL  V ++  LQ +     + + L W   Q 
Sbjct: 659 LARSLDPTADWPDMSDAALLADLETWLAPYLENVNNLPQLQKLDCFSLVMNQLSWSQQQA 718

Query: 708 LDEWLPTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMELLSPA 767
           LD  LPT   L TG    I Y+      L VR+QE FG   SP +A+G   V MELLSPA
Sbjct: 719 LDALLPTSWPLATGTFAPIVYETSGRALLRVRLQETFGMADSPLLAQGKLKVTMELLSPA 778

Query: 768 QRPLQVTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTKRQ 817
           QRPL +T DLASFW G Y EV+KEM+GRYPKH+WPDDPAN + T  TK++
Sbjct: 779 QRPLALTADLASFWQGPYVEVKKEMRGRYPKHLWPDDPANTLPTKFTKKK 828