Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 835 a.a., ATP-dependent helicase HrpB (RefSeq) from Shewanella sp. ANA-3

 Score =  635 bits (1638), Expect = 0.0
 Identities = 367/834 (44%), Positives = 507/834 (60%), Gaps = 23/834 (2%)

Query: 1   MSPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGKIIMLEPRRLA 60
           M+ LPI  ++P L        Q+IL+A  GAGKST  PL +L      G+I+MLEPRR+A
Sbjct: 1   MNNLPIHSLLPSLRDAFAKHAQVILEAPTGAGKSTALPLAMLDWPEISGRILMLEPRRVA 60

Query: 61  ARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVL 120
           AR++A+++A    + VGQ VGYRVRGE++VS  T+LEIVTEGI+TRM+Q DPEL G++++
Sbjct: 61  ARSVAQFIASCRQQAVGQEVGYRVRGESKVSGETRLEIVTEGILTRMIQQDPELTGIEMI 120

Query: 121 IFDEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRG 180
           IFDE HER +  D  LALALEVQS+LR+DLKI+ MSATL    L  L+P A+ ++S+GR 
Sbjct: 121 IFDEIHERHLTTDLGLALALEVQSSLRDDLKILAMSATLSGLTLAELMPDAALLQSEGRS 180

Query: 181 FPIEIRYQPLRSDEPLVTAMQRQIRHLL----QHETGSLLAFLPGAASINQLTEQLSDL- 235
           FP++IRY+P+   +  +  + R +              +L FLPG A I ++ + L +  
Sbjct: 181 FPVDIRYRPVAGQQHWLDHLSRVVLDAAISVGDKGPQDILVFLPGKAEILRVAQYLEERL 240

Query: 236 -ASEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERS 294
            +S V +CPLYG++    Q RAI   ++ RRK+VL+TN+AE+SLTIEGI +V+DSG +R 
Sbjct: 241 DSSHVAVCPLYGELSAQEQDRAIKADSS-RRKIVLSTNVAESSLTIEGIGLVIDSGYKRQ 299

Query: 295 ARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHT 354
           A F+ KTG+TRL   RI+Q+SA QRAGRAGRL  G C+RL+ + + ++     EPE+   
Sbjct: 300 ASFNPKTGVTRLSLKRISQASATQRAGRAGRLAAGECIRLWGQEEHQRLLKADEPEISQA 359

Query: 355 DLAPLALELAQWGAQP-SDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEAHLL 413
           DL  +A + A WGA+  SDL  L  PP+   A A QLLQRLG++D   ++TA GK A+ L
Sbjct: 360 DLVAMAHDCAYWGAKSFSDLLLLTAPPTVNEALAWQLLQRLGMVDEHNKLTAHGKAAYEL 419

Query: 414 GVEPRIAAMLLSADRLGESALQSALALTVLLEEPE---RQVIDVQHSLHRWQQGRHPKQ- 469
           G  PR+A MLL A    E  L +   L   + E     R+  D+ + LH   QG   +Q 
Sbjct: 420 GCHPRLAHMLLVAKSRDEHQLAALACLLAGILEARGLPRKGADIMNYLHFATQGSAGQQA 479

Query: 470 -----KLLIQRAQSLAHKLDTAFSLSSVDSAWLPLVACLAFPDRIAQQRGQQTGQFLLAN 524
                KL + +  + A  +  A      D+    L+  LA+PDRIA+ RG +  Q  LAN
Sbjct: 480 KQWLKKLALDKQFTQADLVAIASHAHHQDAG---LLLALAYPDRIAKSRGVEGYQ--LAN 534

Query: 525 GHGAWLAVEDRLSAADYLVALDLMRGQTQ-ASQIFSALELDIHALERVLPALISRVEQVD 583
           G G  L+ ED L+   +LV  D    + + A +I+ A  L     +  L  L+ R +Q  
Sbjct: 535 GTGVVLSAEDALAQTPWLVVADYQETEGKNAGRIYLASPLLPSLFDEELAELVERYDQCG 594

Query: 584 WDEKAGRLSAEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASEWL 643
           WDE  GR  AE Q ++ Q++L+ E +  P++ ++  ALLSY+R++GL +L W ++ +++ 
Sbjct: 595 WDEAKGRAVAERQTKVGQILLKSEAIANPNRGQIVAALLSYIRQQGLQILNWHDNLAQFQ 654

Query: 644 ARARCAAEWLPEEAWPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWE 703
           AR + A +  P   WP + D  LLA LE WL PYL  V ++  LQ +     L + L W 
Sbjct: 655 ARLQLARDLDPNADWPDMSDTALLANLETWLAPYLENVNNLPQLQKLDCFSLLVNQLTWS 714

Query: 704 LSQQLDEWLPTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMEL 763
             Q LD  LPT   L TG    I Y       L VR+QE FG   SP +A+G   V MEL
Sbjct: 715 QQQALDALLPTSWPLATGTFAPILYDASGRALLRVRLQETFGMADSPLLAQGKLKVTMEL 774

Query: 764 LSPAQRPLQVTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTKRQ 817
           LSPAQRPL +T DLASFW G Y EV+KEM+GRYPKH+WPDDPAN   T  TK++
Sbjct: 775 LSPAQRPLALTADLASFWQGPYVEVKKEMRGRYPKHLWPDDPANTQPTKFTKKK 828