Pairwise Alignments

Query, 256 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., putative ABC-2 type transport system permease protein from Synechococcus elongatus PCC 7942

 Score = 82.8 bits (203), Expect = 7e-21
 Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 18/201 (8%)

Query: 19  RFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQMNGF-----SYMEYIVPGLIMMSVIT 73
           R T+I    LV P I    Y + FG  +GS +   +G      SY+E+I+PG++ +S + 
Sbjct: 36  RITQIVSSGLVSPLI----YIVAFGFGLGSSLRPGSGLPSGYNSYLEFILPGMVALSSMA 91

Query: 74  NSYSNVASSFFSSK-FQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAMVTAVSLLFV 132
            S+     S    + F K  EE L+ PV    +  G ++ GV RGLL    + A+++   
Sbjct: 92  ISFGGTTFSICGERLFSKTFEETLLLPVHPLALHIGKMIAGVVRGLLTSVSLLAIAI--- 148

Query: 133 DLQVDHWG----IIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFVLTPLTYLGGVF 188
            L    WG    + + T+ L    F+  G++  +  K+ + + +   F++ P+++LG  F
Sbjct: 149 -LATGSWGFLNPLFLLTLVLNCATFAGIGVLVGLRVKSLETVGLYNNFLIVPMSFLGATF 207

Query: 189 YSISLLPEFWQSVSKINPIVY 209
           +  + LP   ++   + P+ Y
Sbjct: 208 FDPAQLPIVLKAAVYLMPLTY 228