Pairwise Alignments

Query, 256 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

 Score =  374 bits (959), Expect = e-108
 Identities = 177/256 (69%), Positives = 221/256 (86%)

Query: 1   MYQIYWTAFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQMNGFSYME 60
           M  +Y+TAF S+L KE+ RFTRIWVQTLVPPAI+MTLYF+IFGNL+G RIG+M G SYME
Sbjct: 7   MKHVYFTAFKSILIKEVTRFTRIWVQTLVPPAISMTLYFLIFGNLVGKRIGEMGGVSYME 66

Query: 61  YIVPGLIMMSVITNSYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLV 120
           +I PGLIMMSVIT SYSNVASSFFS+KFQ+N+EEL+VAPVP+YV+IAGYV GGVARGL V
Sbjct: 67  FIAPGLIMMSVITASYSNVASSFFSAKFQRNLEELIVAPVPHYVMIAGYVGGGVARGLCV 126

Query: 121 GAMVTAVSLLFVDLQVDHWGIIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFVLTP 180
           G +VT V++ FVD+ + H G++  TV LTS++F+LGGLINAVFAK++DDISIVPTFVLTP
Sbjct: 127 GTIVTLVAMFFVDISLHHAGLVALTVLLTSILFALGGLINAVFAKSYDDISIVPTFVLTP 186

Query: 181 LTYLGGVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVAL 240
           LTYLGGVFYS++LLP FWQ VS++NP+VYM+N FRYGFLG +D+ I  S A+++ F   L
Sbjct: 187 LTYLGGVFYSLTLLPSFWQGVSQLNPVVYMINVFRYGFLGYADISIGLSVAIMVGFCAGL 246

Query: 241 YCVAHYLVTKGKGLRS 256
           + VA+YL+++G GLR+
Sbjct: 247 WLVAYYLISRGIGLRT 262