Pairwise Alignments

Query, 256 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 256 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  388 bits (996), Expect = e-113
 Identities = 185/256 (72%), Positives = 225/256 (87%)

Query: 1   MYQIYWTAFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQMNGFSYME 60
           M Q+Y+ AF S+L KEINRFTRIWVQTLVPPAITMTLYF+IFGNL+GSRIG+M G SYME
Sbjct: 1   MKQLYFIAFKSILTKEINRFTRIWVQTLVPPAITMTLYFLIFGNLVGSRIGEMGGVSYME 60

Query: 61  YIVPGLIMMSVITNSYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLV 120
           +I PGLIMMSVITNSYSNVASSF+S+KFQ+N+EEL+VAPVP+YV+IAGYV GGVARGL V
Sbjct: 61  FIAPGLIMMSVITNSYSNVASSFYSAKFQRNLEELMVAPVPHYVMIAGYVGGGVARGLCV 120

Query: 121 GAMVTAVSLLFVDLQVDHWGIIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFVLTP 180
           G +VT V++ FVD+ + H G+++ TVFLTSV+FSLGGLINAVFAK+FDDISI+PTFVLTP
Sbjct: 121 GLIVTLVAMFFVDISLHHAGLVVMTVFLTSVLFSLGGLINAVFAKSFDDISIIPTFVLTP 180

Query: 181 LTYLGGVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVAL 240
           LTYLGGVFYS+SLLP FWQ VS +NP+VYM+N FRYGFLG +D+ +  S  +++ F  AL
Sbjct: 181 LTYLGGVFYSLSLLPAFWQGVSALNPVVYMINVFRYGFLGFADISVPLSIGIMVGFCAAL 240

Query: 241 YCVAHYLVTKGKGLRS 256
           + VA+YL+++G GLRS
Sbjct: 241 WGVAYYLISRGIGLRS 256