Pairwise Alignments

Query, 256 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., ABC-type multidrug transport system, permease component from Sphingomonas koreensis DSMZ 15582

 Score =  144 bits (363), Expect = 2e-39
 Identities = 84/259 (32%), Positives = 140/259 (54%), Gaps = 6/259 (2%)

Query: 4   IYWTAFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGS--RIGQMNGFS--YM 59
           + W    +L  KE+ RF ++ +QT+  PA+T  L+ ++F   +G   R   ++G S  + 
Sbjct: 23  VNWGGLWTLYVKEVRRFFKVQLQTIWAPAVTTLLFLVVFTVALGGGGRTVVLDGKSIHFA 82

Query: 60  EYIVPGLIMMSVITNSYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLL 119
           ++I PGLI+M ++ N+++N + S    K Q  I + L+ P+    ++A    G V R   
Sbjct: 83  DFIAPGLIVMGMLQNAFANASFSLLVGKIQGTIVDYLMPPLSTGELLAALCAGAVTRAFC 142

Query: 120 VGAMVTAVSLLFVDLQV--DHWGIIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFV 177
           VGA V     L+  + V   H   I+   FL S+  +L G++ +++A+ FD  + V  FV
Sbjct: 143 VGATVWLAMALWPGVSVAPHHVWAILWFGFLGSLFLALLGVMTSIWAEKFDHAAAVTNFV 202

Query: 178 LTPLTYLGGVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFV 237
           + PL  L G FYS+  L   +Q++S  NP  Y+++ FRYGFLGV+D  I+   AV++   
Sbjct: 203 VAPLALLSGTFYSVDKLAPTFQAISHANPFFYIISGFRYGFLGVADSPIVLGSAVILGLN 262

Query: 238 VALYCVAHYLVTKGKGLRS 256
           + L    + L+  G   RS
Sbjct: 263 MLLGLACYALLRSGWKTRS 281