Pairwise Alignments

Query, 288 a.a., rRNA (cytidine-2'-O-)-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 292 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  216 bits (551), Expect = 4e-61
 Identities = 130/274 (47%), Positives = 169/274 (61%), Gaps = 7/274 (2%)

Query: 14  LYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHDHNEQQK 73
           LY+V TP+GNL DI+ RA+ +L  VD IA EDTR TG+LL    I     + H+HN QQ+
Sbjct: 9   LYLVGTPLGNLEDISYRAVKILRGVDAIAAEDTRRTGRLLQALGIDRPQVSYHEHNRQQR 68

Query: 74  AQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALSASG 133
              L+ +L +G SIALVSDAG P I+DPG  LV     AG+ VVP+ GP AVI AL ASG
Sbjct: 69  GPELIARLQAGQSIALVSDAGMPAIADPGQELVQAAIAAGLTVVPIAGPSAVIAALCASG 128

Query: 134 LPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGEREVV 193
           L SD F+FEGFLPAK KAR+D L  + + +RT IFYESPHR+ ++L+D+  V GG+R +V
Sbjct: 129 LSSDRFAFEGFLPAKRKARRDVLQSLHQEARTLIFYESPHRLRDTLEDLAAVFGGDRAIV 188

Query: 194 LARELTKTFETIQGMPLAELITWIAEDDNRK-KGEMVLLVHGYRDAGEQQLPDEALR--T 250
           LARELTK  E      + E    IAE   R+ +GE  L+V G      Q L ++ LR   
Sbjct: 189 LARELTKLHEEFWRGSVTEA---IAEFTRREPQGEFTLVVAG-AVVQTQALSEDTLRQEL 244

Query: 251 LTILTKELPLKKAAALVAEIHQLKKNALYKWGLE 284
            T+L   +   +A+  +A      K  LY+  LE
Sbjct: 245 ATLLAAGVSRSEASRTLAAQTGTPKRRLYQLALE 278