Pairwise Alignments

Query, 288 a.a., rRNA (cytidine-2'-O-)-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  350 bits (899), Expect = e-101
 Identities = 172/274 (62%), Positives = 219/274 (79%), Gaps = 1/274 (0%)

Query: 12  PILYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHDHNEQ 71
           P LYIVPTPIGNLGD++ RA+++L SV +IA EDTRH+G+L +HF IST+T ++HDHNE+
Sbjct: 5   PALYIVPTPIGNLGDMSPRAVEILQSVSLIACEDTRHSGRLFSHFGISTRTTSVHDHNER 64

Query: 72  QKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALSA 131
            +AQ +++KL  G ++ALVSDAGTPLISDPGYHLV+Q R+AG  V+PLPGPCA ITALSA
Sbjct: 65  ARAQWIIEKLSQGDAVALVSDAGTPLISDPGYHLVSQVREAGFAVIPLPGPCAAITALSA 124

Query: 132 SGLPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGERE 191
           SGLPSD FSFEGFLPAK K R DKL  + +  RT IFYESPHRI ++L+ ++ VLGGER 
Sbjct: 125 SGLPSDRFSFEGFLPAKDKGRNDKLTALREDPRTLIFYESPHRILQTLEAIVAVLGGERP 184

Query: 192 VVLARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHGY-RDAGEQQLPDEALRT 250
           +V+ARELTKTFET      AE++  +  DDN++KGEMVL+ HG+  +  E+ +P +A+ T
Sbjct: 185 MVMARELTKTFETFLSGTAAEVLEKVKSDDNQQKGEMVLMCHGFVAEETEEAIPAKAMET 244

Query: 251 LTILTKELPLKKAAALVAEIHQLKKNALYKWGLE 284
           L +L  ELPLKKAAA+ A+IH LKKNALYK GL+
Sbjct: 245 LALLATELPLKKAAAMAAQIHDLKKNALYKAGLD 278