Pairwise Alignments

Query, 288 a.a., rRNA (cytidine-2'-O-)-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., 16S rRNA (cytidine(1402)-2'-O)-methyltransferase from Rhodopseudomonas palustris CGA009

 Score =  209 bits (533), Expect = 5e-59
 Identities = 120/277 (43%), Positives = 164/277 (59%), Gaps = 2/277 (0%)

Query: 8   PNGAPILYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHD 67
           P  AP L++V TPIG+LGDIT RAL+ LA  D+IA EDTR T +LL  ++IS +    H+
Sbjct: 32  PRIAPGLHLVATPIGHLGDITLRALETLAGADLIACEDTRITHRLLERYSISARLKPYHE 91

Query: 68  HNEQQKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVIT 127
           HN  Q    L++ L  G S+ALVSDAGTPLISDPGY LV +   AG +V+ LPG  AV+ 
Sbjct: 92  HNAAQARPKLLEMLAQGQSVALVSDAGTPLISDPGYKLVREVYAAGHQVIGLPGASAVLV 151

Query: 128 ALSASGLPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLG 187
           ALS +GLP+D F F+GFLP+K  AR+ +L E+A +  T + +E+  RI  S+ D+ D+LG
Sbjct: 152 ALSLAGLPTDRFFFDGFLPSKQGARRARLGELAAIDATLVLFEAGSRIQNSVHDLADLLG 211

Query: 188 GEREVVLARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHGYRDAGEQQLPDEA 247
             RE  + RELTK  + ++   LAEL      D    +GE V+++     A      D+ 
Sbjct: 212 ATREAAICRELTKLHQEVRRATLAELAA--QADTMETRGEFVVVIAPPDPASRVMSDDDL 269

Query: 248 LRTLTILTKELPLKKAAALVAEIHQLKKNALYKWGLE 284
            R L+       +K A A   E+    K  +Y   LE
Sbjct: 270 DRWLSEALTRHSVKDAVAQAVELSGRHKREIYARALE 306