Pairwise Alignments

Query, 288 a.a., rRNA (cytidine-2'-O-)-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  363 bits (933), Expect = e-105
 Identities = 181/273 (66%), Positives = 226/273 (82%), Gaps = 1/273 (0%)

Query: 14  LYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHDHNEQQK 73
           LYIVPTPIGNLGD++ RA++VL  V +IA EDTRH+GKLL+HF IST+T ALHDHNE+ +
Sbjct: 7   LYIVPTPIGNLGDMSPRAIEVLTQVALIACEDTRHSGKLLSHFGISTQTIALHDHNERAR 66

Query: 74  AQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALSASG 133
           AQ +V++L +G SIAL+SDAGTPLISDPGYHLV+  RQ+G  V+PLPGPCA ITALSASG
Sbjct: 67  AQWIVEQLAAGQSIALISDAGTPLISDPGYHLVSHVRQSGFSVIPLPGPCAAITALSASG 126

Query: 134 LPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGEREVV 193
           LPSD FSFEGFLP+K KAR DKLLE+ + SRT IFYESPHRI  SL  M++VLGGER+VV
Sbjct: 127 LPSDRFSFEGFLPSKEKARADKLLELKEDSRTLIFYESPHRIEHSLTTMVEVLGGERQVV 186

Query: 194 LARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHGYRDA-GEQQLPDEALRTLT 252
           +ARE+TKTFET    P+AE++  ++ D  ++KGE+VL+VHG+R A  +  +P  A+ TL 
Sbjct: 187 MAREVTKTFETFLSGPVAEVLATVSSDPYQQKGEIVLMVHGHRAAEDDDAIPTVAINTLK 246

Query: 253 ILTKELPLKKAAALVAEIHQLKKNALYKWGLEN 285
           +L +ELPLKKAAA+ A+IH LKKNALYK+GLE+
Sbjct: 247 LLCEELPLKKAAAIAAQIHGLKKNALYKFGLES 279