Pairwise Alignments

Query, 601 a.a., penicillin-binding protein activator from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., lipoprotein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  298 bits (762), Expect = 6e-85
 Identities = 191/600 (31%), Positives = 306/600 (51%), Gaps = 23/600 (3%)

Query: 18  LSIVLSACSTQP-----SSPDVVDITAQPLLTAQTYLMRADASQGNQQND-WLIMALKAA 71
           LS VL+ C +Q      ++P V    A   L    YL +A  S+  QQ D +L++A  + 
Sbjct: 16  LSAVLAGCGSQAPTSTNTAPTVATSLASAPLAPNVYLAQAANSKDPQQRDTYLLLAAHSY 75

Query: 72  IEENNPDQAQLLIM-RLAKQPLTPTQQAQWQLLRAQLLANTEQYQEALEQLSFQANWSLP 130
           I  N+   AQ L+   L      PT  A+ + L A++L +T    +AL+ L++ + W LP
Sbjct: 76  INANDYAAAQKLLKPMLPSLTQIPTLVAEHKYLTARVLEHTSTPLDALKTLTYPSTWVLP 135

Query: 131 QVQWQQYHQLRADIFTALDRSFDSTRELVALYGLSSNKDKEALADQIWANLNHYSASKII 190
             Q   YHQLRA +F    +  D  REL  L       +   + +QIW  L       ++
Sbjct: 136 GWQMAAYHQLRAHLFQLNKQPIDQVRELSLLTTYLPPAEASEVNNQIWQVLQPMHEQTLL 195

Query: 191 KLSTEPDEAQLDGWLQLAIYMKTLGSDLPQLKNTLEKWLAENPQHPAAIYTPKAITDILA 250
           + + +       GWLQLA   K    D  QL   L  W  +NP HPAA   P  +   L 
Sbjct: 196 EFTKDAKSPVFAGWLQLAYIAKHYAVDPNQLVRYLGDWQKQNPYHPAAAKLPADLDHALN 255

Query: 251 LEIVKPTNTALLLPLTGKFAKQAQFIRDGFVFAMMNDADRQTNATLTIIDTNAETLESVD 310
            +   P N A+LLPLTG+ A  A  IR G + + +   + Q +  +   DT  + + +  
Sbjct: 256 AKPYTPKNIAVLLPLTGQRASAANAIRQGILASYLAKPNEQVS--VNFYDTANDAVSAYQ 313

Query: 311 AILTSKQIDFVVGPLIKGNIEKLQQFQQSR---------GQMIPTLALNIPDQIDTTAGA 361
             + +   +F++GPL+   I++L     S             IP L LN  D+    A  
Sbjct: 314 QAVNAGA-EFIIGPLLPNEIDQLLALNTSATPTATAPAASAPIPQLFLNQTDKFAPDANK 372

Query: 362 CYLALSPEQEVAQAAKHLFTQGYRYPLILAPQNAYGERVVEAFNEEWRRYSKNKVAVNLF 421
            Y ALSP QE A AA  ++  G   PL+LA  +A G+R+ E+F + W++ S   + V  +
Sbjct: 373 FYFALSPAQEAADAATRMYQDGVTMPLLLASNDAIGKRMAESFIQAWKKKSDAPIEVYYY 432

Query: 422 GDKRQLQRNINSIFGLQDSQQNIAQMESLLGMGLESQPRSRRDIDAVYIVANSSELTLIK 481
               +++  +    G++DSQ  IA+++ LLG  +++  RSR+DIDA+Y+++   ELTL+K
Sbjct: 433 DGGDKMKTTVQDALGVRDSQARIARIKELLGNSVQADFRSRQDIDAIYMISTPQELTLLK 492

Query: 482 PFIEVAINPDTRPPKLFSNSNS---NTGGRQYEDLSGVTYSDIPLLIQPAPSIKEQLTQI 538
            FI+V  +  T+P  L+++S S   N   +  +DL+ +T SD P L+Q +      +  +
Sbjct: 493 AFIDVTFSVFTQPVPLYTSSRSRIDNESSQTAQDLNNLTLSDAPWLMQNSEE-NLMVNTL 551

Query: 539 WPESSNAERRLQALGMDAYRLMVELPQMKIVEGYTIDGQTGVLSIDEQCVVQREISWAEH 598
           WP  +N ++RL  +G DA  L+ +L QM+   GY  +G++GVLS++   V+ R++SW  +
Sbjct: 552 WPGWNNGQKRLFVMGYDAMDLISKLAQMRSFTGYQFNGRSGVLSVNPDGVINRQLSWGRY 611