Pairwise Alignments

Query, 421 a.a., cytochrome b from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., cytochrome c1 from Rhodopseudomonas palustris CGA009

 Score =  394 bits (1011), Expect = e-114
 Identities = 195/416 (46%), Positives = 265/416 (63%), Gaps = 30/416 (7%)

Query: 4   LLDWVEKRLPAMNAYKKHLSEYPMPKNFNFWYLFGSLAMLVLVNQLLTGIWLTMNYVPSG 63
           L+ W+E+RLP           YP P+N N+W+ FG++  ++L  Q++TGI L M+Y P  
Sbjct: 13  LMKWLEQRLPIAGLVHSSFIAYPTPRNLNYWWTFGAILSMMLAVQIVTGIVLAMHYTPHV 72

Query: 64  EGAFASIEYIMRDVEYGWLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLWIFGM 123
           + AF S+E I+RDV YGWLLR MH+ GAS FF+ VY+HM RGL YGSY+ PRE+LWI G+
Sbjct: 73  DLAFDSVERIVRDVNYGWLLRNMHAAGASMFFIAVYVHMLRGLYYGSYKAPREVLWILGV 132

Query: 124 LIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVIGDDLTLWIRGDYVISGATLNR 183
           +I+L++MA  FMGY+LPWGQMS+WGA VI +LF A P++GD +   + G Y +   TLNR
Sbjct: 133 IIYLLMMATGFMGYVLPWGQMSFWGATVITNLFSAFPIVGDSIVTLLWGGYSVGNPTLNR 192

Query: 184 FFALHVIALPIVLLLLIVLHILALHEVGSNNPDGIETKLPKGSMGEGYESQFKFHEYYTK 243
           FF+LH + LP V+  ++VLH+ ALH  G NNP G+E K  K                   
Sbjct: 193 FFSLHYL-LPFVIAGVVVLHVWALHVTGQNNPAGVEPKTEK------------------- 232

Query: 244 KYDIIDSIPFHPYGTVKDLIGVAGFLFLFCYVLFFNPEMGGYFLEPPNFEAANPLKTPEH 303
                D++PF PY T+KD+ G++ FL  + + +F+ P    Y  +  N+  ANP  TP H
Sbjct: 233 -----DTVPFTPYATLKDVFGMSCFLVFYSWFIFYMP---NYLGDAENYVPANPGVTPPH 284

Query: 304 IAPVWYFTPFYAILRAVPDKLLGVIAMGASIVVLFLLPWLDRCKVRSYRYRSKFHLFNIA 363
           I P WY+ PFYAILR++P+KL+GVIAM  +I+VL  LPWLD CKVRS RYR     F  A
Sbjct: 285 IVPEWYYLPFYAILRSIPNKLMGVIAMFGAIIVLLFLPWLDSCKVRSSRYRPMAKRFFWA 344

Query: 364 QFTVSFIALGILGALPATPTYTLLAQIFSLCYFMFF-VLLFFYSKNEATKPLPTRV 418
            F V+ + LG LG+ PA   YT L Q+F+  YF +F ++L    + E T PLP  +
Sbjct: 345 -FVVTCLVLGWLGSKPAEGIYTTLGQVFTFFYFAYFLIVLPVLGRMEKTLPLPNSI 399