Pairwise Alignments

Query, 421 a.a., cytochrome b from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., ubiquinol-cytochrome c reductase, cytochrome b (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  660 bits (1703), Expect = 0.0
 Identities = 317/417 (76%), Positives = 352/417 (84%), Gaps = 17/417 (4%)

Query: 4   LLDWVEKRLPAMNAYKKHLSEYPMPKNFNFWYLFGSLAMLVLVNQLLTGIWLTMNYVPSG 63
           L++W++ R+P    Y +H+ +Y  P NFNFWY FGSLAMLVLVNQLLTGIWLTMNYVP+ 
Sbjct: 5   LINWIDARIPMTATYNRHVGQYATPTNFNFWYFFGSLAMLVLVNQLLTGIWLTMNYVPTA 64

Query: 64  EGAFASIEYIMRDVEYGWLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLWIFGM 123
           EGAFAS+EYIMRDVEYGWLLRYMHSTGASAFFVV+YLHMFRGLIYGSYQKPRELLW+FGM
Sbjct: 65  EGAFASVEYIMRDVEYGWLLRYMHSTGASAFFVVIYLHMFRGLIYGSYQKPRELLWLFGM 124

Query: 124 LIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVIGDDLTLWIRGDYVISGATLNR 183
           LIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVIGDDLTLWIRGDYVISGATLNR
Sbjct: 125 LIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVIGDDLTLWIRGDYVISGATLNR 184

Query: 184 FFALHVIALPIVLLLLIVLHILALHEVGSNNPDGIETKLPKGSMGEGYESQFKFHEYYTK 243
           FFALHVIALP+VL++L+ LH++ALHEVGSNNPDGIE K  K   G               
Sbjct: 185 FFALHVIALPLVLVVLVFLHLIALHEVGSNNPDGIEIKKNKDENGWP------------- 231

Query: 244 KYDIIDSIPFHPYGTVKDLIGVAGFLFLFCYVLFFNPEMGGYFLEPPNFEAANPLKTPEH 303
               +D IPFHPY TVKD++GVAGFL +FCYVLFF PE GGYFLE PNFEAANP+KTPEH
Sbjct: 232 ----VDGIPFHPYYTVKDIMGVAGFLIVFCYVLFFIPEGGGYFLEKPNFEAANPMKTPEH 287

Query: 304 IAPVWYFTPFYAILRAVPDKLLGVIAMGASIVVLFLLPWLDRCKVRSYRYRSKFHLFNIA 363
           IAPVWYFTPFYAILRAVPDKL GVI MG SI VLF+LPWLDRCKV+S RYRS  H  NIA
Sbjct: 288 IAPVWYFTPFYAILRAVPDKLGGVIMMGLSIGVLFVLPWLDRCKVKSVRYRSTLHKLNIA 347

Query: 364 QFTVSFIALGILGALPATPTYTLLAQIFSLCYFMFFVLLFFYSKNEATKPLPTRVTY 420
           QF VSFI LG LG +PA+PT T++AQ+F+  YF FFV L+ YSKNE TKP+P R+T+
Sbjct: 348 QFAVSFIVLGYLGVVPASPTLTIVAQVFTFTYFGFFVALWVYSKNEKTKPVPARLTH 404