Pairwise Alignments

Query, 456 a.a., serine endoprotease DegQ from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., PDZ/DHR/GLGF from Synechococcus elongatus PCC 7942

 Score =  223 bits (569), Expect = 7e-63
 Identities = 146/370 (39%), Positives = 213/370 (57%), Gaps = 23/370 (6%)

Query: 13  SLSLSAILSPLPATAALPLSVNGEQIPSLAPMLEKVTPAVVSIAVEGTQVSRQRLP---- 68
           SL+ +A +    AT A   + N      +A  + ++ PAVV I  E T V+R+  P    
Sbjct: 39  SLAQAAPVEIAQATPANTAAPNSNPDSFVAAAVRQIGPAVVRIDTERT-VTRRAAPMFDD 97

Query: 69  DQFRFFFGPDF---PTEQLQERPFRGLGSGVIINADKGYVVTNYHVINGAEKIRVKLYDG 125
             FR FFG DF        ++   RG GSG +++ + G ++TN HV+  A+++RV L DG
Sbjct: 98  PFFREFFGSDFFGNVNPPARQEVQRGQGSGFVVDGN-GLIMTNAHVVANADQVRVTLRDG 156

Query: 126 REFDAELVGGDEMSDVALLKLN-KAKNLTEIRIADSDKLRVGDFAVAIGNPFGLGQTVTS 184
           REF   + G D ++D+AL++++ K + L   RI +S  + VGD+A+AIGNP GL  TVT 
Sbjct: 157 REFTGRVRGADSVTDLALVEVDTKGERLPTARIGNSSNVEVGDWAIAIGNPLGLDNTVTL 216

Query: 185 GIVSALGR--SGLNIENFE-NFIQTDAAINSGNSGGALVNLNGELIGINTAILGPNGGNV 241
           GIVS+LGR  S + I +   +FIQTDAAIN GNSGG LVN  GE+IGINTAI    G   
Sbjct: 217 GIVSSLGRRSSAVGIPDKRLDFIQTDAAINPGNSGGPLVNSRGEVIGINTAIRQAPG--A 274

Query: 242 GIGFAIPSNMMKNLTDQILEFGEVKRGMLGVQGGEITSELA--------DALGYESSKGA 293
           GIGFAIP N  K +  Q+L+ G+V    LGVQ   +T ++A          +     +G 
Sbjct: 275 GIGFAIPVNTAKQIETQLLKNGKVSHSYLGVQLLSLTPQMARDNNRDPNSTVRLPEVQGV 334

Query: 294 FVSQVVPDSAADKAGIKAGDIITSLNGKKIDTFSELRAKVATLGAGKTITLGVLRDGKNQ 353
            +  V  ++ A  AG++ GD++ +++G+ + T  E + +V     G+++ L V+RDG  Q
Sbjct: 335 LIMGVQRNAPAATAGLRRGDVVIAIDGQAVTTADEFQRRVEASQVGQSLNLSVIRDGNRQ 394

Query: 354 NIDVTLGEQQ 363
            I V  GE Q
Sbjct: 395 QIAVRTGELQ 404