Pairwise Alignments

Query, 456 a.a., serine endoprotease DegQ from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., peptidase/PDZ domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  257 bits (657), Expect = 5e-73
 Identities = 169/475 (35%), Positives = 251/475 (52%), Gaps = 53/475 (11%)

Query: 23  LPATAALPLSVNGEQIPSLAPMLEKVTPAVVSIAVEGTQVSRQ----------------- 65
           L     L  +     +P    + +    AVV+I+ E T  + +                 
Sbjct: 13  LMVAVVLSSTAQAASLPDFRELAKNAGAAVVNISTEKTVQAPENPFGDMLRNAPQGTPFD 72

Query: 66  RLPDQFRFFFGPDFPTEQLQERPFRGLGSGVIINADKGYVVTNYHVINGAEKIRVKLYD- 124
           R  +QF  F G   P +Q      R LGSG I++AD GY+VTN HVI  A+ I V + + 
Sbjct: 73  RFFEQFERFHGKMRPQKQ------RSLGSGFILSAD-GYIVTNNHVIADADVIHVNIENE 125

Query: 125 ---GREFDAELVGGDEMSDVALLKLNKAKNLTEIRIADSDKLRVGDFAVAIGNPFGLGQT 181
                 +DA+++G DE +D+ALLK++  + L  +R  DSD L VG++ +AIGNPFGL  +
Sbjct: 126 TGKSASYDAKVIGTDEETDLALLKIDAKRQLPVLRFGDSDSLEVGEWLMAIGNPFGLDHS 185

Query: 182 VTSGIVSALGRSGLNIENFENFIQTDAAINSGNSGGALVNLNGELIGINTAILGPNGGNV 241
           VT+GI+SA GR  +    F+NF+QTDA+IN GNSGG L+N+ GE+IGINTAI+       
Sbjct: 186 VTAGILSAKGRD-IRSGPFDNFLQTDASINPGNSGGPLINMKGEVIGINTAIVA---SGQ 241

Query: 242 GIGFAIPSNMMKNLTDQILEFGEVKRGMLGVQGGEITSELADALGYESSKGAFVSQVVPD 301
           GIGFAIPSNM   + DQ+    +V+RG +GV   ++    A ALG    +GA V  V+P 
Sbjct: 242 GIGFAIPSNMAARIIDQLKSDKKVRRGWIGVTIQDVDENTARALGLGEPRGALVGSVMPG 301

Query: 302 SAADKAGIKAGDIITSLNGKKIDTFSELRAKVATLGAGKTITLGVLRDGKNQNIDVTLGE 361
             ADKAGIKAGDI+  + G+ I     L  +VA L  G+T  + + R+G+ + +++TLGE
Sbjct: 302 EPADKAGIKAGDILLKVEGEDIADSGRLLRRVAALKPGETAKITLWRNGQTKTVNLTLGE 361

Query: 362 QQ---------NAKTKAESLHQGLS---------GAELSNTTDSDPIQGVKVTEVQKGSA 403
           +            +   ES  Q  S          AE +     D  QG+ V  V++G  
Sbjct: 362 RTAEHLAAQGGTPRQTPESKQQASSSLGLTVRPPNAEEARALKLDRPQGLLVIAVEEGRP 421

Query: 404 AESYQLQKDDIIIGVNRKRVKNIAELRAIME---KSPNILALNIQRGERTLYLVV 455
           A    ++  D+++  N   V + A+L  +++   K    + L IQR  +T +  +
Sbjct: 422 AADADIRAGDVVLSANLHPVNSTADLAKVVQEDAKRRGAVMLQIQRRGQTFFRTI 476