Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., periplasmic serine protease, Do/DeqQ family from Pseudomonas stutzeri RCH2

 Score =  213 bits (542), Expect = 8e-60
 Identities = 117/271 (43%), Positives = 168/271 (61%), Gaps = 3/271 (1%)

Query: 77  QGLGSGVIVSEKGYIITNYHVVAQADQIVVALQDGRAAAAQLVGKDRRTDIAVLRVEGTG 136
           Q LGSG I+S+ GY++TN HVVA AD+I+V L D     A+L+G D R+D+AVL+VEG G
Sbjct: 93  QSLGSGFIISDDGYVLTNNHVVAGADEIIVRLPDRSELEAKLIGADPRSDVAVLKVEGKG 152

Query: 137 LPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTFGIISATGRSSISADGRQAFIQTDAAIN 196
           LP + +      K G+ VLAIG+P+    T T GI+SATGR S+  +    FIQTD AIN
Sbjct: 153 LPTVKIGRSDELKAGEWVLAIGSPFGFDHTVTAGIVSATGR-SLPNESYVPFIQTDVAIN 211

Query: 197 DGNSGGALVNTQGELVGINTASFQQATDLETYGISFAIPYSLASKIMTKIIADGRVIRGY 256
            GNSGG L N +GE+VGIN+  F ++      G+SFAIP  +A  +  ++  DG+V RG+
Sbjct: 212 PGNSGGPLFNLKGEVVGINSQIFTRSGGF--MGLSFAIPIDVAMDVANQLRTDGKVNRGW 269

Query: 257 IGVDGQDINSMTSRLLGNEHVGGIIILGVDPNGPAARAGFLEQDILLKIDGKKINGRQNV 316
           +GV  Q++N   +   G E   G ++  V   GPAAR+G    D++L ++GK I    ++
Sbjct: 270 LGVVIQEVNKDLAESFGLERPAGALVAQVMDGGPAARSGLRVGDVILSLNGKPIVMSADL 329

Query: 317 TDTVTDLRPGTVVDFTLLRKGEEIVLPVTIG 347
              V  L+PG+     ++R G+  +L V+IG
Sbjct: 330 PHLVGALKPGSKARMEVVRDGDRKMLDVSIG 360



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 278 GGIIILGVDPNGPAARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKG 337
           GG++I  +  NGPAA  G    D++  ++ + IN           L     V   +LR+G
Sbjct: 402 GGVVITEI-LNGPAAMIGLRPGDVITHLNNQAINSAATFGRVAEQLPKNRSVSMRVLRQG 460

Query: 338 EEIVLPVTIGE 348
               +   + E
Sbjct: 461 RASFITFKLAE 471