Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., PDZ/DHR/GLGF from Synechococcus elongatus PCC 7942

 Score =  190 bits (482), Expect = 6e-53
 Identities = 136/385 (35%), Positives = 198/385 (51%), Gaps = 48/385 (12%)

Query: 8   SISLGLLAAIAIIMVTPSLRAKLMPVVEQ--PRNIGALQISFNE----AVRKAAPAVVNI 61
           +ISLG+L  +  +   PSL       + Q  P N  A   + +     AVR+  PAVV I
Sbjct: 22  AISLGVLVTVGGLQARPSLAQAAPVEIAQATPANTAAPNSNPDSFVAAAVRQIGPAVVRI 81

Query: 62  -----------------YNRKYSEND--------RRKLSIQGLGSGVIVSEKGYIITNYH 96
                            + R++  +D         R+   +G GSG +V   G I+TN H
Sbjct: 82  DTERTVTRRAAPMFDDPFFREFFGSDFFGNVNPPARQEVQRGQGSGFVVDGNGLIMTNAH 141

Query: 97  VVAQADQIVVALQDGRAAAAQLVGKDRRTDIAVLRVE--GTGLPVIPLNPDYHPKVGDVV 154
           VVA ADQ+ V L+DGR    ++ G D  TD+A++ V+  G  LP   +    + +VGD  
Sbjct: 142 VVANADQVRVTLRDGREFTGRVRGADSVTDLALVEVDTKGERLPTARIGNSSNVEVGDWA 201

Query: 155 LAIGNPYNLGQTTTFGIISATGRSSISA---DGRQAFIQTDAAINDGNSGGALVNTQGEL 211
           +AIGNP  L  T T GI+S+ GR S +    D R  FIQTDAAIN GNSGG LVN++GE+
Sbjct: 202 IAIGNPLGLDNTVTLGIVSSLGRRSSAVGIPDKRLDFIQTDAAINPGNSGGPLVNSRGEV 261

Query: 212 VGINTASFQQATDLETYGISFAIPYSLASKIMTKIIADGRVIRGYIGVD--------GQD 263
           +GINTA  +QA      GI FAIP + A +I T+++ +G+V   Y+GV          +D
Sbjct: 262 IGINTA-IRQAPGA---GIGFAIPVNTAKQIETQLLKNGKVSHSYLGVQLLSLTPQMARD 317

Query: 264 INSMTSRLLGNEHVGGIIILGVDPNGPAARAGFLEQDILLKIDGKKINGRQNVTDTVTDL 323
            N   +  +    V G++I+GV  N PAA AG    D+++ IDG+ +         V   
Sbjct: 318 NNRDPNSTVRLPEVQGVLIMGVQRNAPAATAGLRRGDVVIAIDGQAVTTADEFQRRVEAS 377

Query: 324 RPGTVVDFTLLRKGEEIVLPVTIGE 348
           + G  ++ +++R G    + V  GE
Sbjct: 378 QVGQSLNLSVIRDGNRQQIAVRTGE 402