Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Peptidase S1C, Do (NCBI) from Rhodospirillum rubrum S1H

 Score =  226 bits (576), Expect = 1e-63
 Identities = 143/377 (37%), Positives = 206/377 (54%), Gaps = 31/377 (8%)

Query: 5   WVRSISLGLLAAIAIIMVTPSL-RAKLMP---VVEQ-PRNIGALQISFNEAVRKAAPAVV 59
           W R +  G   A+ +    P+   A+ +P     EQ P     ++++F   VR  APAVV
Sbjct: 15  WARGVLAGASVAVLLAFGGPAAGAAEQVPGAGTAEQVPMAAAEIKLTFAPVVRAVAPAVV 74

Query: 60  NIYNRKYSEND-----------RRKLSIQG------------LGSGVIVSEKGYIITNYH 96
           NI++++                RR L  +G            LGSGVI+  +G ++TN H
Sbjct: 75  NIFSQRVITESQVPPMFADPLFRRFLEERGMLGKPRERVQRSLGSGVILRSEGVVVTNAH 134

Query: 97  VVAQADQIVVALQDGRAAAAQLVGKDRRTDIAVLRVEG-TGLPVIPLNPDYHPKVGDVVL 155
           VV  A +I VAL D R   A+LVG D R D+AVLR++  T LP + L     P+VGD+VL
Sbjct: 135 VVNGASEITVALNDRREFPAELVGLDPRADLAVLRIKSDTPLPSLALADGEPPEVGDLVL 194

Query: 156 AIGNPYNLGQTTTFGIISATGRSSISADGRQAFIQTDAAINDGNSGGALVNTQGELVGIN 215
           AIGNP+ +GQT T GI+SA  R++      + FIQTDAAIN GNSGGALV+  G LVGIN
Sbjct: 195 AIGNPFGVGQTVTSGIVSAQARTTAGISDYRFFIQTDAAINPGNSGGALVDLSGRLVGIN 254

Query: 216 TASFQQATDLETYGISFAIPYSLASKIMTKIIADGRVIRGYIGVDGQDINSMTSRLLGNE 275
           TA + +  D  + GI FAIP  +   ++  I+ DG+V   ++G DGQ + +  +  +G +
Sbjct: 255 TAIYSR--DGGSVGIGFAIPVEMVRSVVEGILEDGKVRHPWLGADGQSVTTELASHMGLD 312

Query: 276 HVGGIIILGVDPNGPAARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLR 335
              G+ I  V   GPAA+AG  E D++L +DG+ +   + +   +   RPG  V   + R
Sbjct: 313 RPLGVAITDVAKGGPAAKAGLAEGDVILALDGRPVFEGETLRYRIATHRPGDKVVLGIRR 372

Query: 336 KGEEIVLPVTIGEDTRD 352
            G++  L VT+     D
Sbjct: 373 DGKDTTLAVTLEAPPED 389



 Score = 31.6 bits (70), Expect = 5e-05
 Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 249 DGRVIRGYIGVDGQDINSMTSRL---LGNEHVG-GIIILGVDPNGPAARAGFLEQDILLK 304
           D  +++G    DG ++++M   L   LG E    G+ + G+  +G AAR G    D +++
Sbjct: 393 DTTLLKGSHPFDGAEVSNMNPALAEELGLEKASRGVTVTGLG-DGVAARIGIRPGDRVIE 451

Query: 305 IDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVL 342
           ++GK I+  +++   ++  +P  V    + R G  + L
Sbjct: 452 VNGKAIDAVRDLKAAIS--KPSRVWQVVVDRDGRAVRL 487