Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., periplasmic serine protease DegS (RefSeq) from Shewanella loihica PV-4

 Score =  322 bits (825), Expect = 9e-93
 Identities = 172/347 (49%), Positives = 244/347 (70%), Gaps = 7/347 (2%)

Query: 7   RSISLGLLAAIAIIMVTPSLRAKLMPV-VEQPRNIGALQISFNEAVRKAAPAVVNIYNRK 65
           +++  GL+ A   +++TP +          Q R    +++SF++AVR+AAPAVVNIY+  
Sbjct: 12  KAVFFGLIMAAVFLVITPWITGTANHGNFFQSRGQNGIELSFSQAVRRAAPAVVNIYSLS 71

Query: 66  YSENDRRKL---SIQGLGSGVIVSEKGYIITNYHVVAQADQIVVALQDGRAAAAQLVGKD 122
             ++  R L   S+QGLGSGVI+S++GYI+TNYHVV +AD+IVVALQDGR   +++VG D
Sbjct: 72  IDQS--RPLNSGSLQGLGSGVIMSKEGYILTNYHVVKKADEIVVALQDGRKFTSEVVGSD 129

Query: 123 RRTDIAVLRVEGTGLPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTFGIISATGRSSISA 182
             TD+AVL++EG  LPV+P+N D   +VGDVVLAIGNPYNLGQT T GIISATGR+ +S+
Sbjct: 130 SVTDLAVLKIEGDTLPVVPINLDVPAQVGDVVLAIGNPYNLGQTITQGIISATGRNGLSS 189

Query: 183 DGRQAFIQTDAAINDGNSGGALVNTQGELVGINTASFQQATDLETYGISFAIPYSLASKI 242
            G   F+QTDAAIN GNSGGAL++T G L+GINTA+FQ   +   +GI+FAIP  LA  I
Sbjct: 190 -GYLDFLQTDAAINAGNSGGALIDTSGRLIGINTAAFQIGGEGGGHGINFAIPIKLAHSI 248

Query: 243 MTKIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVGGIIILGVDPNGPAARAGFLEQDIL 302
           M K+I DGRVIRG +G+ G+ IN + +++L    + G+++ GVD  GPAA+A    +D++
Sbjct: 249 MGKLIKDGRVIRGALGITGEAINPVMAQILNLPDLTGVMVTGVDHQGPAAQAKLRPRDVI 308

Query: 303 LKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVLPVTIGED 349
            K + + + G + + D + +  PGT V  T++R G+   +PVTIGE+
Sbjct: 309 TKFNDETVPGVEMLMDRIAETPPGTQVTMTIIRSGKYYEVPVTIGEN 355